Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Reimplement cBioPortal client for new API #1435

Merged
merged 11 commits into from
Jan 22, 2024
Merged

Conversation

bgyori
Copy link
Member

@bgyori bgyori commented Jan 22, 2024

The cBioPortal has recently revamped its API and the original API for which a client was implemented in indra.databases.cbio_client was taken down. The new APi is completely different in terms of its endpoints, much of the nomenclature, and the data structures it returns, requiring effectively a new implementation of most functions. However, the PR aims to preserve the behavior of each client function for compatibility with various integrations.

@bgyori bgyori merged commit 190a426 into sorgerlab:master Jan 22, 2024
2 checks passed
@bgyori bgyori deleted the cbio_update branch May 13, 2024 01:12
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant