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Allowing the refresh_matviews script to be run synchronously. #4632

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merged 1 commit into from
Sep 12, 2023
Merged

Allowing the refresh_matviews script to be run synchronously. #4632

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5 changes: 3 additions & 2 deletions lib/CXGN/BrAPI/v2/Germplasm.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -801,7 +801,8 @@ sub store {
}

my $bs = CXGN::BreederSearch->new( { dbh=>$dbh, dbname=>$c->config->{dbname}, } );
my $refresh = $bs->refresh_matviews($c->config->{dbhost}, $c->config->{dbname}, $c->config->{dbuser}, $c->config->{dbpass}, 'stockprop', 'concurrent', $c->config->{basepath});

my $refresh = $bs->refresh_matviews($c->config->{dbhost}, $c->config->{dbname}, $c->config->{dbuser}, $c->config->{dbpass}, 'stockprop', 'concurrent', $c->config->{basepath}, 0);

#retrieve saved items
my @data = _simple_search($self,undef,$accession_list);
Expand Down Expand Up @@ -1017,7 +1018,7 @@ sub update {

#update matviews
my $bs = CXGN::BreederSearch->new( { dbh=>$dbh, dbname=>$c->config->{dbname}, } );
my $refresh = $bs->refresh_matviews($c->config->{dbhost}, $c->config->{dbname}, $c->config->{dbuser}, $c->config->{dbpass}, 'stockprop', 'concurrent', $c->config->{basepath});
my $refresh = $bs->refresh_matviews($c->config->{dbhost}, $c->config->{dbname}, $c->config->{dbuser}, $c->config->{dbpass}, 'stockprop', 'concurrent', $c->config->{basepath}, 0);

#retrieve updated item
my @result = _simple_search($self,[$germplasm_id]);
Expand Down
26 changes: 20 additions & 6 deletions lib/CXGN/BreederSearch.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -340,6 +340,12 @@ sub refresh_matviews {
my $materialized_view = shift || 'fullview'; #Can be 'fullview' or 'stockprop'
my $refresh_type = shift || 'concurrent';
my $basepath = shift;
my $async = shift;

if (!defined($async)) {
$async = 1;
}

my $refresh_finished = 0;
my $async_refresh;

Expand All @@ -354,14 +360,22 @@ sub refresh_matviews {
}
else {
try {
my $refresh_command = "perl $basepath/bin/refresh_matviews.pl -H $dbhost -D $dbname -U $dbuser -P $dbpass -m $materialized_view";
$async_refresh = CXGN::Tools::Run->new();
if ($refresh_type eq 'concurrent') {
print STDERR "Using CXGN::Tools::Run to run perl bin/refresh_matviews.pl -H $dbhost -D $dbname -U $dbuser -P $dbpass -m $materialized_view -c\n";
$async_refresh = CXGN::Tools::Run->new();
$async_refresh->run_async("perl $basepath/bin/refresh_matviews.pl -H $dbhost -D $dbname -U $dbuser -P $dbpass -m $materialized_view -c");
print STDERR "Using CXGN::Tools::Run to ".($async ? "asynchronously" : "synchronously")." run $refresh_command -c\n";
if ($async) {
$async_refresh->run_async($refresh_command." -c");
} else {
$async_refresh->run($refresh_command." -c");
}
} else {
print STDERR "Using CXGN::Tools::Run to run perl bin/refresh_matviews.pl -H $dbhost -D $dbname -U $dbuser -P $dbpass -m $materialized_view\n";
$async_refresh = CXGN::Tools::Run->new();
$async_refresh->run_async("perl $basepath/bin/refresh_matviews.pl -H $dbhost -D $dbname -U $dbuser -P $dbpass -m $materialized_view");
print STDERR "Using CXGN::Tools::Run to ".($async ? "asynchronously" : "synchronously")." run $refresh_command\n";
if ($async) {
$async_refresh->run_async($refresh_command);
} else {
$async_refresh->run($refresh_command);
}
}

for (my $i = 1; $i < 10; $i++) {
Expand Down