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Describe the bug --keep-going does not keep going if there is a MissingInputException.
Given a list of desired outputs created from independent dags(as shown in image), I would expect snakemake to keep running the workflows that are not affected by the missing files. This does not seems to be the case.
Building DAG of jobs...
MissingInputException in rule testrule in file /home/jorgen/snakeminimalex/Snakefile, line 1:
Missing input files for rule testrule:
output: c.out
wildcards: name=c
affected files:
c.txt
DAG when run only for existing files shows independent "DAGs" (single rule for this example).
Snakemake version
v8.28.0
Describe the bug
--keep-going
does not keep going if there is aMissingInputException
.Given a list of desired outputs created from independent dags(as shown in image), I would expect snakemake to keep running the workflows that are not affected by the missing files. This does not seems to be the case.
Minimal example
Snakefile
Execution:
Logs
DAG when run only for existing files shows independent "DAGs" (single rule for this example).
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