#Test for difference in parental allele effect on phenotypes
Analysis was run on Beagle and on CRI (Tarbell/Gardner)
bin/beagle_final: code for running opposite effect GWAS model (on Beagle)
bin/matpatgwas: code for running maternal, paternal, sex-specific, and standard GWAS (on CRI)
bin/expression_opposite: code for testing SNPs with gene expression (on CRI)
bin/plotscripts: annotate and plot manhattan and QQ plots for association studies on CRI (on CRI)
Manuscript Preprint: Parent of Origin Effects on Quantitative Phenotypes in a Founder Population