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adapter too long. Maximum adapter size is 32bp #23

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Shelestova-Anastasia opened this issue Jan 25, 2022 · 0 comments · Fixed by #30
Closed

adapter too long. Maximum adapter size is 32bp #23

Shelestova-Anastasia opened this issue Jan 25, 2022 · 0 comments · Fixed by #30

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@Shelestova-Anastasia
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Falco version 0.3.0.

Hello!
We want to switch to falco from fastqc.
We are using bgi adapters. There is an adapter with length = 42.
There was no any problems to use it in fasqc.

With falco I receive the error:
adapter too long. Maximum adapter size is 32bp: AAGTCGGATCGTAGCCATGTCGTTCTGTGAGCCAAGGAGTTG

I see 32 is hardcoded adapter size limit. Why?
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show all positions with adapters - got rid of fastqc diff adapters le… Shelestova-Anastasia/falco
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@Shelestova-Anastasia