Takes a BAM file as input and returns a JSON file that summarizes:
- Template lengths
- CIGAR string per cycle
Bam Histogram Calculator 0.1
Savo Lazic <savo.lazic@oicr.on.ca
Collects various statistics from a BAM file that allow creation of histograms for QC purposes
USAGE:
bam_histogram_qc [OPTIONS] <FILE>
FLAGS:
-h, --help Prints help information
-V, --version Prints version information
OPTIONS:
-t, --threads <threads> Number of threads to use [default: 1]
ARGS:
<FILE> File path to BAM file. Use '-' for STDIN