Build: Added check of native flags availability #189
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What has happened to the CI in this request? |
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No idea, I forced pushed to trigger it again. |
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f40868a6a Release 1.0.1 cd174e0bf Bump version number 6bdada5f3 Set release version and date 913e67fa7 Add dependency on six a0bab6739 Add sphinx-fortran dependency 325bba6ca Add RTD v2 yaml file c5879e222 Mention R&D 100 award 113767ee3 Add missing resolved issues to CHANGELOG 5f3ade7e2 Fix broken links e892d713b Document that OS=mac is needed when building dylibs with gmake (resolves silx-kit#170) c81062e2b Clarify that 64-bit OS is not required (resolves silx-kit#194) 63eeefa32 Fix for issue silx-kit#220 c7f329ab8 Merge pull request silx-kit#217 from hmaarrfk/distutils d6bccbd71 Explicitly use old CMake FindPython policy b345842fb Merge pull request silx-kit#204 from diegorsjv/bugfix/fortran-interface-stride-passbyvalue bcc5a2548 Update gitlabCI runner config [skip ci] f838d6cfd Merge pull request silx-kit#216 from LLNL/dependabot/github_actions/actions/checkout-4 83c6e47ec Update to support Python 3.12 c61eca71d Bump actions/checkout from 3 to 4 fa1014f5e Merge pull request silx-kit#188 from DimitriPapadopoulos/actions 21f4f399d Merge pull request silx-kit#215 from DimitriPapadopoulos/_WIN32 4c5d622ed Fix typo found by codespell ad2f02b3e Testing _WIN32 is enough, no need to test _WIN64 920df4d96 Automatically update GitHub Actions in the future d846d33fa Merge pull request silx-kit#211 from LLNL/markcmiller86-add-rd-100-badge 6cdff3060 Add R&D100 badge bc5e24145 update gitlab compiler versions d2a52e633 update gitlab build options 2b523d92a Removed unused functions from python test utils c1845815e Add void to functions taking no parameters (resolves silx-kit#208) 300e77d12 Clean up minor issues in documentation [skip ci] a3afa49f6 Clarify intent of zfp_stream_maximum_size() [skip ci] 3a90823d9 Clarify that thread safety requires OpenMP [skip ci] fbca45407 Modified the set_stride_xd functions in zfp.f90 so that stride values are actually passed by value and not by reference as they were. This resulted in segmentation faults when using strided compression with the Fortran bindings f15d00720 Update badges and actions names b78055fa3 Organize actions and enable codecov upload 2c7cdeaa2 Add code coverage action ee10feb73 squash merge misc/actions-fixes into develop c4f175667 Create actions debug workflow for linux [skip ci] 0d7de48d7 Create actions debug workflow for macos 8a1dd0e0e Revert gitlab change ff3a33926 update gitlabCI user fc96c9158 Merge pull request silx-kit#189 from LLNL/misc/build-tests 54c8706de Add BUILD_TESTING_FULL to documentation [skip ci] b50a4613e update github actions flag c578028e0 Add BUILD_TESTING_FULL option (issue silx-kit#177) 28cb77742 Fix zfpy type issues (issue silx-kit#171) 2ac91d785 Merge pull request silx-kit#180 from DimitriPapadopoulos/actions 6c307aa70 Merge pull request silx-kit#184 from seung-lab/fix_numpy_abi 4de8c1b7e CMake RPath fix (issue silx-kit#181) 50dfaacdc build: use oldest numpy ABI to ensure maximum compatibility 92424bf65 Merge pull request silx-kit#174 from seung-lab/wms_py_header_reader 228c7a48a Update GitHub Actions e57895219 Merge branch 'develop' into wms_py_header_reader b2ad09e55 Fix issue silx-kit#176 51afffc05 fix: recommended changes c05eba980 fix: remove strides from header dict fc0a19c54 fix: cast everything to python int adfeb3584 feat(python): add full header reader for zfp streams c616bbec3 Update CHANGELOG 6d7d2424e Prevent LTO in libm dependency check (resolves silx-kit#169) fdc30ff69 Set ZFP_VERSION_DEVELOP 35155961e Merge branch 'release1.0.0' into develop f39af7264 Release 1.0.0 82a557c82 Set release version and date 7f84893b1 Clarify ZFP_VERSION_DEVELOP meaning and value 074f01092 Point badges and documentation to release1.0.0 branch 1fc3539e9 Align license.rst with LICENSE ed01090c8 Add version_tweak to zFORp 9ac63801c Document change in ZFP_VERSION mapping fff64a14a Revert to gencodec for consistency with zfpcodec 07485e1a3 Update ReadTheDocs badge link e1af8487b Bump copyright date, add copyright notice to zfp.hpp 2445a7c3c Bump zFORp_library_version 3ed74345d Ensure make clean removes libcfp 6c66c6652 Proofread and ensure documentation is up to date 9cc3a25b1 Update expected testzfp errors for large arrays 8efecf10c Fix various bugs in diffusionC 49db1371b Fix incorrect order of distance() arguments afabe40bb Add cfp references, pointer, iterators, serialization to CHANGELOG 302d0a734 Fix C89 incompatibility in iteratorC.c a9203c644 Add missing const_array::params() and const_array::set_params() c6974acec Add zfp_field_blocks() to zFORp 46deb6105 Update execution doc with planned future capabilities e4357d0e2 Cosmetic changes to compression modes doc f88a41319 Add variable-length code example 3deba5f1b Add Apple clang OpenMP instructions bc29521be Update authors, zfp homepage URL 43d29affc Update links to zfp applications c9ec980f7 Update zfp homepage URL 3c5445648 Update authors and contributors 4ce851be7 Update versions.rst to align with CHANGELOG.md 44d4f849d Remove unused variable in decoder test 9a9a22637 update doc versions and add some missing changes 962a48bde update version in license and tests c86be611d Update zfpy version number c99a41f4c Fix mismatched memory (de)allocation calls 6825ee263 Add missing space between literal and identifier 91f1823fa Update version identifiers for next release cb618438b Correct suffix for examples/array2d.h 539db0866 Update CHANGELOG to reflect directory restructuring 1c66f76b7 Silence compiler warnings in tests b2ea04160 Remove -I../array 1bcbf0ecb Ensure proper make clean in examples 8eecbfbb5 Document new name for zFORp module ec96f631f Document lower bound on maxbits in expert mode c597619ce Fix compiler warnings in tests b1ce0c16b Merge branch 'develop' into refactor/install-directory 73aeb4644 Fix compiler warnings/errors in examples 7edcd917d Update time limit on gitlab tests 725f5cd7f remove fortran modules directory from git tracking 982ca8683 Update cfp header includes, rename main cfp header 0f530708a Silence copy constructor warning 54966d1e5 Fix gmake build issues 7c9b4d23d Merge branch 'develop' into refactor/install-directory 81dbdd02d Fix Fortran GNU builds and compiler requirements 97fa1d75b Disable thread safety checks when OpenMP is absent 6c46dccf9 Update makefiles and fix a few inconsistencies f08994139 Clarify that low-level API ignores execution policy 736581dd4 Silence implicit conversion warnings 86ffc4f20 Rename ZFP_VERSION_DEVELOP, remove ZFP_VERSION_RELEASE 0135c037e Merge branch 'bugfix/thread-safety' into develop (resolves silx-kit#154) 20a2efdcb Use zfp_field_blocks() in codec 5c424bbff Update CHANGELOG [skip ci] 11f992849 Enabled OpenMP with testviews e89d80383 Handle empty field in zfp_field_blocks() 0447f7e56 Make codec thread-safe b9166ad1a Add LDFLAGS to support -lomp on Mac 5190cae2d Add zfp_field_blocks() e1ac5e4ee Merge pull request silx-kit#165 from DimitriPapadopoulos/codespell 20e62c582 Fix typos found by codespell 05b3f4c56 Update fortran module name and move internal codec headers c13a6c7b9 Update bitstream.c include in cuda [skip ci] 9e78178a4 Fix include in zfpy 3674669df Update zforp install location 5fd6de39f update zfp util f56070f6a updated tests fixed additional missing includes 615e86f4b Update headers in examples and fix bad include eeac3a28a Updated cfp includes, fixed build issues c73261887 Update cmake b2366c0e7 updated inline src and moved cfp src 4aafbc81a Update hpp include guards afe6a01f9 Update includes for internal headers 013210b06 Update includes for all non-internal headers e1e4840c0 Move include files 9b0d278f8 Update where gitlab cpu tests are run 26678cded Replace stdio with iostream in testviews bb59d8457 Fix minor documentation issues 537c12052 Add compressed-array example cc2e85008 add policy mode validation checks 938ffd2e9 change exec policy params to use void* 7335959b8 Merge branch 'refactor/stream-offsets' into develop 24bcfa28b Merge branch 'develop' into refactor/stream-offsets 2d975ce89 Correct type mismatches to silence compiler warnings bf718a604 Update bitstream types in CUDA tests 9a1e3409f Introduce bitstream_{offset,size,count} types for 64-bit support b40ab53dd temporarily disable actions side of cmake test 9dcf734c8 temporarily disable actions side of cmake test 72fcac571 Add cmake version checking to tests 980155a8e Merge pull request silx-kit#162 from jonashaag/patch-1 cf7bd9eac Fix exception handling in compress_numpy 5d3ac203e Revert accidental change to ZFP_VERSION_RELEASE define 0335096e6 Fix version.h compile error dd915b95a Update version files to support intermediate version numbers 15d77178c Move memory management to internal namespace 0f06782e4 Rename word -> stream_word 1d6fbe597 Silence compiler warnings in tests f49a7fe5d Silence compiler warnings in tests baaa782ac Remove debugging code from diffusion example 76d684ded Update CMakeLists to support OpenMP with AppleClang 19b261d6c Add macros for constructing version number and string ad926b6a8 Add back references to execution section in docs f6880a6a6 Add silx-kit#150 to CHANGELOG d36f54d9b Fixes silx-kit#150 6bfd003ab Revert attempted fix for silx-kit#150 e620e546d Undo failed attempt to fix silx-kit#150 a7c6047fa Attempted fix for issue silx-kit#150 (cmocka macOS build) da4e28293 Allow setting BIT_STREAM_WORD_TYPE on make line 33065d237 Add support for generic codec in diffusion example f4e0850c6 Clarify that rounding mode, daz supported only on CPU 2b03babb8 Add conda zfp package and zarr application to docs 4a33aab52 add missing zfp field and stream tests 38e3cbbe2 Silence const compiler warnings in ppm aeb707c1d Add CUDA tests for unsupported 4D data 5fe5ed198 Change name of actions workflow ba2df4bcd move gitlab cpu tests to new system a674bf58b Remove Travis CI files fd5731846 Move status badge from travis to actions 64e5db65e Update python cmake build scripts 7ad847694 Add python build hints to tests 50774dcfd Enable cython action temporarily disable win tests d42fb0eea enable actions pytests and split py adv decompress test into bytes/memview versions afac3f94f made test output more verbose 31902956b remove unneeded test code 84fb3d880 Make array::set(0) zero-initialize array 323e3e708 Move Cache and Store to internal namespace eb6cd2873 Bug fix: reopen codec when compacting store 122918c4c Fix incorrect loop counter types in simple.c 662fc0f42 Add size_bytes() to cfp 05156f50d Replace ieeecodec with generic codec templated on scalar type 8441d7063 Fix inconsistent coding style in zfpcodec 142a11f72 Setup github actions config 5555333ae add promote/demote util tests b91dcafb4 Added field_metadata failure tests 6aec9dc42 compilation error fix de381394f Fix unused variable warning d65af032c Add link to MVAPICH2-GDR 5c991daae Add/rename top-level files for E4S compliance 99e526cd5 Document CUDA limitations 22beacb09 Document ZFP_WITH_CUDA in config file 57c50e038 Add FAQ on error distributions bbfb88db8 Clarify FAQ silx-kit#17 on violated tolerances 1cd5978fb Add printf FAQ 95dc35828 Merge pull request silx-kit#148 from vicentebolea/cmake-fix-include-dir b6f344ff4 CMAKE: ZFP_INCLUDE_DIRS avail at configure time 310e12d51 Merge pull request silx-kit#147 from vicentebolea/add-zfp-cuda-var 670368238 Update zfp-config.cmake.in f5d8c2824 Add templated encode/decode tests f65ac4434 Move cuda testing to new machine 5079b8958 Extend and include testviews in tests 2d0ba85f8 Fix view const accessors a922f6408 Clean up .travis.yml 1a4565c6f Force gcc-4.9 on Travis CI 416e19573 Require CMake 3.9 in tests af933bb99 Suppress CMake warning about unused ZFP_OMP_TESTS_ONLY f718c5616 Add nullptr_t proxy pointer constructors d83d3432c Update README build report badge bfbaa9929 Undo attempted codecov fix 1e74a04c4 Add mask parameter to header.size_bytes() 625691784 Bug fix: overflow due to subnormals (resolves silx-kit#119) 3f768fad6 Fix zfp_field bugs that confused precision and byte size ecbbf7633 Fix missing codecov uploads ef8b8791a Document C++ wrappers for low-level API 8e790cbf5 Update installation instructions 881644019 Complete citation record 0ff612eca Merge pull request silx-kit#141 from researchapps/add/github-citation cd14c0633 GitHub has recently added this standard file, CITATION.cff, that will render a sidebar link to easily copy paste bibtex information to cite the work. This should be useful for zfp 33eed2fb0 Fix missing size_t and declarations in tests c3a7b3343 Fix missing size_t types and casts 191073760 Fix C89 incompatibility in tests a85609f07 Build cmocka using prescribed build type for MSVC 149de0a54 Update cfp tests to use size_t 416d16b82 Complete size_t transition for array tests 83d572f17 Fix broken C89 support in tests 45c9e82bf Silence warnings and use size_t over uint in tests 7450b7282 Silence miscellaneous compiler warnings ce5c5b3af Silence compiler warnings 4e49b3180 Fix gtest deprecation warnings 6443612cb Merge branch 'develop' of github.com:LLNL/zfp into develop 02872e2a0 added templated encode/decode block tests 722782608 Merge branch 'refactor/64-bit-indexing' into develop 954390e19 Silence compiler warnings in tests 2a2ff3571 Update docs with new zfp_field and function signatures 28a3858b3 Silence compiler warnings in tests d97e589b6 Update examples and utils to use size_t array dimensions b756eb043 Handle missing size_t/ptrdiff_t c3672137c Update Fortran API to support 64-bit indexing 64f71dde8 Update Python API to support 64-bit indexing 5f3ad37d6 64-bit indexing: replace uint/int with size_t/ptrdiff_t 24bcaf80e Organized tests/array directory ea8124f8d merged cpp namespace into zfp namespace 01ccb95d3 Clarify constraints on rate in docs b47749f56 changed gtest version to fix compilation issues with non-gnu linux compilers 496a416c3 fixed macro expansion issue (commit issue fix) 1c5bc2ab7 fixed macro expansion issue c9adc2a4a fixed macro expansion issue 1f5fb92ab Rename Travis files 62f350340 Merge branch 'feature/const-arrays' into develop 5bdd22f37 Merge branch 'develop' into feature/const-arrays 26c5eb9df Do not reset rate in zfp::index::implicit::clear() a571d4350 Add appropriate casts around CHAR_BIT * sizeof() constructs 5c7f6ecc4 Add dispatch function for integer encoding/decoding 6cf405a27 added in const array bitstream checksum test 5f6394ee9 disable travis tests temporarily 6a7364b3c Fix docs on array serialization constraints cea4ff6ce Merge branch 'feature/unbiased-error' into develop 8a4487e75 Document ZFP_ROUND_* macros bd2b1545c Fix CUDA rounding issue due to incorrect NBMASK 3205d7219 Add rounding modes to CUDA implementation 4f3f1d4a7 Disabled travis linux testing due to new usage restrictions caf14c7f1 Added index names to test reporting a949b1c55 Added block index tests for const arrays 2968e8e0e Specialize coding for unconstrained rate 74a11efef Merge pull request silx-kit#137 from jwsblokland/bugfix/cmake 2fba7f690 CMake: (fix) OpenMP dependency. f25982add Merge branch 'misc/travis-update' into develop eb1d4c2d3 Discontinue xcode7.3 tests e5a55f762 Fix build errors 4f409922f Added const array checksum tests 97044629f Only call cudaGetDeviceProperties once. fcae077d9 Add ability to specify CUDA compilation flags. 8a4db7fb0 Added in tests for multiple precision/accuracy compression mode values fb4d7a613 Fixed uninitialized value error in test fixture 09a9f7614 Initial work on const array tests 2d92b09d9 moved version info to zfp/version.h header 6389b89d3 Implemented fixes discussed in issue silx-kit#126 12772bd48 Fix incorrect math in relative-error bound FAQ a51171f14 Document promotion/demotion of scalars 3ddbd24d5 renamed header.size() to header.size_bytes() to better clarify its functionality 6b2da922e strip out redundant CI builds 11341f46f Add new rounding mode: ZFP_ROUND_FIRST 6d24ac9f1 Fixed various CI test issues 928bbceb2 refactored GitlabCI config to be more extensible f3736ca59 Update diffusion documentation 321ce7fcd Add codec and index documentation 68099ac68 Add const_array support for expert mode 1d64a1613 Fix off-by-one error in ZFP_MAX_BITS aabe13f93 Documentation: Use checkmarks in tables 8ded86bd6 Add FAQ on C vs. Fortran order ebe66d628 Add FAQ on compressed storage size d7686bc49 Bug fix: compressed block size in reversible mode (resolves silx-kit#127) 35bc789ab Rename zfp::codec derived classes d91176121 Rename conflicting zfp_stream* codec::zfp::zfp 6b6602b6d Add zfp::codec namespace 24f9b0708 Add support for const_array in diffusion example d2932309e Fix incorrect rate granularity in FAQ c733c923e Document const_array rate granularity and zero initialization 1d38a7f02 Refactor and fix bugs in arrays, store, index, codec 6993e72da Add exception on cache overflow 93780bb1c Add size_bytes() to fixed-rate arrays 4abe3d5ca Fix incorrect cache size initialization 71d24c018 Add missing size_bytes() for block stores 4142c9995 Remove debug info bb4e567a5 Add const_array documentation 9f2b09c88 Add missing size_bytes() for block caches fee7e80eb Consolidate shape() and block_shape() functions b2816e2ef fix compiler error during cuda testing 0b4f9a3b8 Add 1D, 2D, 4D const_arrays a56a749fb Merge branch 'develop' into feature/const-arrays dd174cd21 Update documentation on exceptions 0ecdc57cd Add zfp_field layout functions 4a0d1f3eb Use zfp_bool in examples 0ceec10cc Ensure diffusionC builds with cfp ccdec24e3 Add zfp_bool documentation 53b69c4dc Document ppm example ee3c9fe23 Refactor array/cache/store to support const_array 10612d476 Exclude redundant header inclusion aa71d4ade Improve POD memory allocation 350867321 Add inclusion of missing headers 1de54120e Add zfp_config for const_array constructor 695886a76 Move install command to utils subdirectory f4e559860 Change gtest build paths (resolves silx-kit#108) ab07ab956 Remove zfp utility as install target 1fa8dbbef Add zfp utility as install target (resolves silx-kit#122) a215e19c7 Merge branch 'bugfix/omp-large-arrays' into develop 67ab4c983 Avoid Win32 size_t overflow b09d079aa Resolves silx-kit#125 1051621b7 Pick up .travis.yml fix 915e04141 Squashed commit of the following: f784bbebd Revert to OpenMP 2.0 to accommodate MSVC e525e484e Fix OpenMP 32-bit int overflow; require OpenMP 3.0 f668af3d5 Add support for querying rate, precision, accuracy d24b528e9 Fix bad link in file compression docs a96940074 Bug fix: CUDA bit streams limited to 2^31 bits 8d09ee13d Silence compiler warnings abc769647 Correct comments/code for coding partial/strided blocks 4fd729283 Rename cfparrays.*; add cfp/src/template directory 779b36653 Minor improvements to simple.c 5cefb373e Clarify zfp_read_header() documentation 7e68696db Consolidate intro and overview sections 1829523e6 added small fixes for zfp testing, new gitlab CI functionality 74364a8a4 Merge branch 'feature/cfp-references' into develop 71f13b819 Refactor cfp header API to align with accessors ccdc3ec68 Silence PGI compiler warnings 5feae4ca4 Support no alignment via ZFP_CACHE_LINE_SIZE=0 ebb172d00 Propagate zfp_private_defs to tests a048b3f58 Expose ZFP_CACHE_LINE_SIZE to address PGI compiler bug e11004ae1 Add cfp serialization documentation bf09645b6 Update Makefiles to simplify macOS builds 7eb57fa02 Clean up cfp docs 7ab1ed615 Update docs to use zfp_bool 9c6032bd8 Make cfp its own section 6f111ce21 Update cfp documentation 61f7b2caf Add zfp_bool documentation ac22c5847 Clean up merge and :c:expr: Sphinx issues 6db9cf049 Merge branch 'feature/cfp-references' into develop 661cd2aaa Add cfp multidim iterator tests dca15d47d Ensure consistent cfp parameter names and APIs 72e4fd1fe Remove unnecessary casts b2e658527 Add iterators to diffusionC; ensure C89 compatibility 88906c395 Add cfp random-access iterators and const qualifiers; refactor header 03f213bab Rename and reorder accessor members f7682e657 Refactor cfpheader to avoid circular inclusion 87b770ea1 changed booleans from int to zfp_bool type 6b8e03dd8 Added cfp header tests b20b2bb40 added header functionality to cfp 75c2a59cf Avoid importing unused cpython array for compatibility with pypy 50aa4f193 changed uint8_t and memoryview test 29d7de129 change to void, add tests similar to ensure_ndarray 5cb7a3253 remove print cython version 89b19d3f5 remove apt-get cython3 a4d6edac1 change cython3 to cython 2739f2e7a upgrade pip first 2fc75483f change back to pip 1d9524a59 remove upgrade pip b560ddcbf use pip3 instead pip 66d45d1c6 change cython3 in .travis.yml 0bed27e1d enable cython3 upgrade on xenial 3c2c06128 add cython version check in travis.sh 8269e09b2 check cython version in zfpy.pyx bf05fb43d change to void * f0f824063 add <char*> in stream_open 31d8c51c2 remove const for test a3c572a10 Update python/zfpy.pyx 14da51149 Update python/zfpy.pyx a75ef2615 replace bytes of compressed stream to uint8_t 1f4973df4 fixed missing semi-colon ee58ae344 changed cfp 4d fixed rate tests to prevent future problems a36d4063b Fixed issues with 4d checksum tests 1c3123355 Fix failing 4D cfp test due to lack of precision 29c4f5a9d Changed out of date uint references to size_t in docs 0541ec97c Added 4d cfp documentation 15187ed8b Disabled broken checksum tests 42d3c7fe8 Added cfp 4d tests a79c49305 Merge branch 'develop' into feature/const-arrays 0817b0865 Add documentation for 4D arrays a5959fe02 Use python3 with sphinx documentation 6f829dd50 Enable 4D array support in cfp 78c2c51f8 Merge branch 'develop' into feature/cfp-references c6bcb0988 Remove temporary fix to private_view::get() 2fbe0084a Merge branch 'refactor/arrays' into develop 8b794fb8b Fix ppm issues with clamping; add chroma dimensionality parameter 33149742a Add support for 1D chroma blocks in ppm 1fd3a5f80 Revise zfp_bool type for C++ and update function signatures 50b635b45 Add tests for 4D compressed arrays 635db5c5b Fix minor issues with 3D array tests 915ba2159 Fix copy-paste errors uncovered by tests bdb2623ce Fix ppm range expansion bug 5816bcde1 Add ppm example d2c844c6d Add pointer and iterator tests for views 6a544b056 Add missing const_pointer and const_iterator friends to views 8e1d8dcd1 Fix testzfp-large tolerances for new default cache size 23bb66f67 Remove obsolete 4D deserialization test 935c38937 changed ctor name 67383cc4a Correct order of arguments in cfp {ptr,iter}.distance bf58a4ad0 Prepare cfp for 4D arrays 02a403ee7 Add testzfp tests for 4D array classes fdd14c9e4 Add 4D compressed-array classes 044cbe14f Add offset dereference operator tests for pointer and iterators 35d5c8cb1 Fix copy-paste error in iterator3 9761ee91c Update docs for iterators and views cf899daf0 Fix bad typedefs in iterators 9bf999348 Refactor accessors using container template 29cbdf760 Changed cfp to use safer static casting 6bd6d7248 Change to cfp header/array typedefs to solve issue with pre gcc 4.8 fa0d09c45 add cfp_header stubs to prep for new zfp header class 5b687458d Promote all iterators to random access; prepare for view iterators 19720bf79 Clean up documentation 520596bdc Fix incorrect reads through private_view f3e1ca9a5 Fix zfp_stream_maximum_size() estimate in reversible mode ca97dfdc1 Extra cleanup & organization pass for cfp tests/docs d1d185c11 fix iteratorC formatting to match new output types 97749bd02 Add missing functionality for 2d/3d cfp_iter, move cfp fully from uint/int to size_t/ptrdiff_t 3bdb7fa31 zfpy 0.5.5 8f81ae47d Update FAQ on relative error 2dafa9f81 Update cfp pointer docs 8487b618e Add missing functionality for 2d/3d cfp_ptr d83c2c81f Fix cfp naming consistency, add missing 1d functionality 68bc279be Mention const pointer availability b5255c5a0 Update docs to reflect 64-bit support 0df472c3c Small tweak to cfp docs 2104f25cc Add const_pointer tests 97818431d Add const iterator tests 0086df3a8 Add pointer comparison tests a29e83a99 Const accessor constructors must accept const containers 3a33078ba zfpy 0.5.5-rc5 cf8740a1d zfp 0.5.5-rc4 94ac5c00f Add alignment, header tests 739ea17c0 zfpy 0.5.5rc3 61048ab23 zfpy rc2 37096f146 Update docs for new const accessors, serialization, etc. 9d0d1df3a Fixed iteratorC to match output with iterator example 1167e3d5c Docs changes: fix ptr/iter names, add missing functions, fix broken links ba0d5f46e Add zfpy-wheels long description 64f1b58af Update version 8d0f76fd2 Windows friendly setup.py 33f9c6657 Add URL 0f148ecf6 Build wheel with setup.py 35b5cafd0 Workaround for conflicting container_type declarations ad613305d Resolve conflicting container_type in private views 1c4b9d9be Replace array with container_type in views 2ecc4686f Make accessors return const_reference; add pointers to views cc332853e cfp accessor documentation first pass 27aca9c3d Fix iterator ~3u bug 20d81aa21 Add full 64-bit support to compressed arrays da4a71f2b Silence type conversion warnings f7893523f Rewrite zfp codec to use zfp::cpp templates 80b7841a2 Add C++ wrappers around low-level C API 470a743d8 Add typename to please MSVC 14 6a7ee0935 Change header API to rely on constructor e30a70a73 Replace last occurrence of stream_word_bits 45c508d00 Plug memory leak in zfp::array::construct 9548b9404 Plug memory leak in block store abc6922ee Clean up codec and use stream_alignment() 90009fd0c Add stream_alignment() function 4e6f0315d Fix using declarations for MSVC a42b52d6f Work around googletest iterator bug f6a8be00f Update compressed_data() API in cfp bc55d5e77 Fix codec constructors 4d4001e8e Remove obsolete code 81e577dd8 Refactor array serialization 24270e887 Add Boolean type 229a37df6 Respect cache size request 6f0b78e42 Move codec specializations 6e7c12b5f Use std:: prefix in memory allocation where appropriate 878b329c7 Add type traits 3539cc849 Reinstate private views 4f2525c92 Fix incorrect cache size initialization a688d9de4 Initialize array dimensions in constructor from view efb78225b Move codec from BlockStore to BlockCache 086a156ad Rename storage -> store d8b099c91 Fix codec source file names a7b5a6d52 Update tests to support new array API d2ca8ae63 Add new block storage + cache and refactor arrays + views ecd4fb496 Add specialized allocator for void* 3b12f7c08 Made zfp memory alignment a compile-time macro 91e702f73 Add missing cbegin/cend to 2D and 3D arrays b98c864b4 Update 3D references, pointers, iterators, and views a2a7a2cf0 Fix incorrect pointer2 comparisons e8e1000c8 Update 2D references, pointers, iterators, and views b05afe923 Fix inconsistent relational operators 47e4c7cea Replace 1D view_reference with new generic reference 90eff6506 Traverse array using new const iterator aacc4989a Refactor 1D references, pointers, iterators and add const versions 079c409fc Fix Cython 'Assignment to non-lvalue' errors 2d7873710 Remove trailing semicolons which Cython treats as errors a1a876c96 Fix make install clobbering existing gtest installations fc0ecac33 Optimized cfp references and arrays based on results of testing c4029cf48 Added cfp iterator example 08adb27db Fix typo in CXXFLAGS 0202b0be3 Check for undefined __STDC_VERSION__ to suppress warnings bc2fe6bf9 Add reversible mode to simple.c 1bb7955a6 Minor documentation changes 5254963d9 Added iterator tests 18f6b8ad4 Added proxy iterators bbcded585 Fix AppVeyor badge URL 74e8a145c Fix bad URLs e1b45152d Reorganize README file a05e2e529 Update license info per LLNL guidelines bcea89307 Update Appveyor project URL 05ef34110 Added tests for pointers and array flat ptr/ref 26be0ff9b Added pointer shifting/arithmetic and flat array ref/ptr accessors c8969dfa0 changed references to linear indexing 4079af78b Implemented cfp pointers 5710f2913 Removed unnecessary export_ macro. ee7ecc233 Revert "Minor optimization of lifting transform." 92fca13de Minor optimization of lifting transform. 4cb27e2a6 Fixed linker errors. aa6266927 Fixed LNK4217 linker warnings when using Visual Studio. Also removes .lib and .exp files created along executable file of a project using static zfp library. b515bd112 Fixed linker error LNK1114 when using Visual Studio. The fix required a change of name of zfp command line executable. 2ab06b3d7 hotfix: Fix wrong memset params order b1a4f8a0c set and copy added to cfp references, diffusion example updated to use new API d62a7f9e6 added get_ref to cfp arrays and get (value) to cfp refs (with associated tests) af30bdc24 Changed cfp_array initialization syntax to fix windows build issue 28decba39 cfp_arrayALL changed from raw pointer to struct wrapped pointer (prep for cfp refs) e748a9c96 Clean up code edf135f5a Add compressed block index bcf97058c Add variable rate support f80c5103c Add uncompressed block index 40ae50ce1 Return block size in codec e9f4743cd Initial pass for 3D arrays 40ef12b71 Merge branch 'develop' of github.com:LLNL/zfp into develop 814c11086 Add reversible mode to simple.c 6fe05a5d6 Minor documentation changes fa79823c7 Merge branch 'misc/checksum-gen-tool' into develop 1c6144a99 updated cython for new checksum API b82d9e836 TODO: update cython for new test utils APIs 1a32165eb Update cpp and CFP tests to conform to new checksum API e75a0b111 Extend zfpChecksumsLib API for original-input specific function (omits irrelevant parameters) 32b4637ad Checksums now support tuples (key1, key2, value), where new key2 encodes array dimension lengths. Encode, decode, endtoend all updated 93b602ce2 Checksum (key, value) lookup working for encode, decode, and endtoend tests. zfpChecksumsLib updated to handle (key, value) lookup 9e8a000ea Checksum generation working for encode, decode, endtoend tests, across {dimensionalities 1-4}x{all scalar types} 00b944b01 endtoend tests can print (key, value) = (descriptor, checksum) pairs when compiled with flag PRINT_CHECKSUMS 881d8418d Update links to zfp website 6da6eff20 updated cython for new checksum API d85b6fa48 Remove redundant CUDA h2d transfers 3119f94df add short mention of third-party tools in overview a8def9af5 adding a short note and link for h5z-zfp 068f8150f Merge pull request silx-kit#61 from maddyscientist/feature/cuda_encode_unroll 110a4945e Merge pull request silx-kit#67 from maddyscientist/feature/cuda_decode_unroll 4cfd5882f TODO: update cython for new test utils APIs 070e4e4b6 Update cpp and CFP tests to conform to new checksum API cf8c779d6 Extend zfpChecksumsLib API for original-input specific function (omits irrelevant parameters) bf577f528 Checksums now support tuples (key1, key2, value), where new key2 encodes array dimension lengths. Encode, decode, endtoend all updated 64ef0ea9f Checksum (key, value) lookup working for encode, decode, and endtoend tests. zfpChecksumsLib updated to handle (key, value) lookup 208c6bbf7 Checksum generation working for encode, decode, endtoend tests, across {dimensionalities 1-4}x{all scalar types} 680fbb941 endtoend tests can print (key, value) = (descriptor, checksum) pairs when compiled with flag PRINT_CHECKSUMS 034f37bde Fix missing CUDA test function from previous refactor commit 047da679a Merge branch 'refactor/combine-testcases' into develop 7b75e6ce6 Remove fatal fail_msg() calls from setupCompressParam() becuase it would terminate some looping tests early ec7771247 Minor test changes: print uint64 in hex format, add "ERROR: " prefix to nonfatal print statements cb784f8f1 Refactor compress/decompress, and hash bitstream/array to separate functions for re-use in endtoend tests 7c751efab Combine endtoend testcases for CUDA, similarly to past 2 commits. Also perform some refactoring across endtoend testcode a608eb9b0 Combine testcases for OpenMP endtoend tests, such that one testcase now tests 1 compression mode, varying the compression parameter (3), threadcount (3), and chunk size (3). 32fa7e76a Combine testcases for serial endtoend tests, such that one test case tests a compression mode across all 3 compression parameters, covering all compress/decompress checksum comparisons, without prematurely ending at the first failure 045ca9cbb Refactor encode/decode block special value tests (10 testcases become 1) a7e77cc1f Fix typos in CFP documentation ede3bee7b Merge branch 'develop' into feature/cuda_decode_unroll 989e1aa6c Merge pull request #1 from LLNL/develop b7dcdb019 Unroll optimization for CUDA encode scatter partial functions ae26c99ce Merge pull request silx-kit#65 from maddyscientist/feature/cuda_inline_constants 761127592 Let the compiler inline the permutation lookup table into registers rather than using __constant__ memory 4444fd309 Fix C++ undefined behavior with last commit. All tests now pass. bee1d74fa Add support for unbiased errors and tighter error bounds 9cb007ff2 CUDA optimization: unrolling optimization gather_partial functions f76320231 Fix RuntimeError using int64 in zfpy on Windows (Pull Request silx-kit#60) d488a6f69 Appveyor: build zfpy on MSVC release builds with python 2.7 and 3.5 (expect zfpy failures on MSVC) 8f1756928 Fix mixed declarations and code c0a7acc4f Update contact email 5384b5715 Merge branch 'release0.5.5' into develop git-subtree-dir: src/zfp git-subtree-split: f40868a6a1c190c802e7d8b5987064f044bf7812
t20100
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Jan 19, 2024
f40868a6a Release 1.0.1 cd174e0bf Bump version number 6bdada5f3 Set release version and date 913e67fa7 Add dependency on six a0bab6739 Add sphinx-fortran dependency 325bba6ca Add RTD v2 yaml file c5879e222 Mention R&D 100 award 113767ee3 Add missing resolved issues to CHANGELOG 5f3ade7e2 Fix broken links e892d713b Document that OS=mac is needed when building dylibs with gmake (resolves silx-kit#170) c81062e2b Clarify that 64-bit OS is not required (resolves silx-kit#194) 63eeefa32 Fix for issue silx-kit#220 c7f329ab8 Merge pull request silx-kit#217 from hmaarrfk/distutils d6bccbd71 Explicitly use old CMake FindPython policy b345842fb Merge pull request silx-kit#204 from diegorsjv/bugfix/fortran-interface-stride-passbyvalue bcc5a2548 Update gitlabCI runner config [skip ci] f838d6cfd Merge pull request silx-kit#216 from LLNL/dependabot/github_actions/actions/checkout-4 83c6e47ec Update to support Python 3.12 c61eca71d Bump actions/checkout from 3 to 4 fa1014f5e Merge pull request silx-kit#188 from DimitriPapadopoulos/actions 21f4f399d Merge pull request silx-kit#215 from DimitriPapadopoulos/_WIN32 4c5d622ed Fix typo found by codespell ad2f02b3e Testing _WIN32 is enough, no need to test _WIN64 920df4d96 Automatically update GitHub Actions in the future d846d33fa Merge pull request silx-kit#211 from LLNL/markcmiller86-add-rd-100-badge 6cdff3060 Add R&D100 badge bc5e24145 update gitlab compiler versions d2a52e633 update gitlab build options 2b523d92a Removed unused functions from python test utils c1845815e Add void to functions taking no parameters (resolves silx-kit#208) 300e77d12 Clean up minor issues in documentation [skip ci] a3afa49f6 Clarify intent of zfp_stream_maximum_size() [skip ci] 3a90823d9 Clarify that thread safety requires OpenMP [skip ci] fbca45407 Modified the set_stride_xd functions in zfp.f90 so that stride values are actually passed by value and not by reference as they were. This resulted in segmentation faults when using strided compression with the Fortran bindings f15d00720 Update badges and actions names b78055fa3 Organize actions and enable codecov upload 2c7cdeaa2 Add code coverage action ee10feb73 squash merge misc/actions-fixes into develop c4f175667 Create actions debug workflow for linux [skip ci] 0d7de48d7 Create actions debug workflow for macos 8a1dd0e0e Revert gitlab change ff3a33926 update gitlabCI user fc96c9158 Merge pull request silx-kit#189 from LLNL/misc/build-tests 54c8706de Add BUILD_TESTING_FULL to documentation [skip ci] b50a4613e update github actions flag c578028e0 Add BUILD_TESTING_FULL option (issue silx-kit#177) 28cb77742 Fix zfpy type issues (issue silx-kit#171) 2ac91d785 Merge pull request silx-kit#180 from DimitriPapadopoulos/actions 6c307aa70 Merge pull request silx-kit#184 from seung-lab/fix_numpy_abi 4de8c1b7e CMake RPath fix (issue silx-kit#181) 50dfaacdc build: use oldest numpy ABI to ensure maximum compatibility 92424bf65 Merge pull request silx-kit#174 from seung-lab/wms_py_header_reader 228c7a48a Update GitHub Actions e57895219 Merge branch 'develop' into wms_py_header_reader b2ad09e55 Fix issue silx-kit#176 51afffc05 fix: recommended changes c05eba980 fix: remove strides from header dict fc0a19c54 fix: cast everything to python int adfeb3584 feat(python): add full header reader for zfp streams c616bbec3 Update CHANGELOG 6d7d2424e Prevent LTO in libm dependency check (resolves silx-kit#169) fdc30ff69 Set ZFP_VERSION_DEVELOP 35155961e Merge branch 'release1.0.0' into develop f39af7264 Release 1.0.0 82a557c82 Set release version and date 7f84893b1 Clarify ZFP_VERSION_DEVELOP meaning and value 074f01092 Point badges and documentation to release1.0.0 branch 1fc3539e9 Align license.rst with LICENSE ed01090c8 Add version_tweak to zFORp 9ac63801c Document change in ZFP_VERSION mapping fff64a14a Revert to gencodec for consistency with zfpcodec 07485e1a3 Update ReadTheDocs badge link e1af8487b Bump copyright date, add copyright notice to zfp.hpp 2445a7c3c Bump zFORp_library_version 3ed74345d Ensure make clean removes libcfp 6c66c6652 Proofread and ensure documentation is up to date 9cc3a25b1 Update expected testzfp errors for large arrays 8efecf10c Fix various bugs in diffusionC 49db1371b Fix incorrect order of distance() arguments afabe40bb Add cfp references, pointer, iterators, serialization to CHANGELOG 302d0a734 Fix C89 incompatibility in iteratorC.c a9203c644 Add missing const_array::params() and const_array::set_params() c6974acec Add zfp_field_blocks() to zFORp 46deb6105 Update execution doc with planned future capabilities e4357d0e2 Cosmetic changes to compression modes doc f88a41319 Add variable-length code example 3deba5f1b Add Apple clang OpenMP instructions bc29521be Update authors, zfp homepage URL 43d29affc Update links to zfp applications c9ec980f7 Update zfp homepage URL 3c5445648 Update authors and contributors 4ce851be7 Update versions.rst to align with CHANGELOG.md 44d4f849d Remove unused variable in decoder test 9a9a22637 update doc versions and add some missing changes 962a48bde update version in license and tests c86be611d Update zfpy version number c99a41f4c Fix mismatched memory (de)allocation calls 6825ee263 Add missing space between literal and identifier 91f1823fa Update version identifiers for next release cb618438b Correct suffix for examples/array2d.h 539db0866 Update CHANGELOG to reflect directory restructuring 1c66f76b7 Silence compiler warnings in tests b2ea04160 Remove -I../array 1bcbf0ecb Ensure proper make clean in examples 8eecbfbb5 Document new name for zFORp module ec96f631f Document lower bound on maxbits in expert mode c597619ce Fix compiler warnings in tests b1ce0c16b Merge branch 'develop' into refactor/install-directory 73aeb4644 Fix compiler warnings/errors in examples 7edcd917d Update time limit on gitlab tests 725f5cd7f remove fortran modules directory from git tracking 982ca8683 Update cfp header includes, rename main cfp header 0f530708a Silence copy constructor warning 54966d1e5 Fix gmake build issues 7c9b4d23d Merge branch 'develop' into refactor/install-directory 81dbdd02d Fix Fortran GNU builds and compiler requirements 97fa1d75b Disable thread safety checks when OpenMP is absent 6c46dccf9 Update makefiles and fix a few inconsistencies f08994139 Clarify that low-level API ignores execution policy 736581dd4 Silence implicit conversion warnings 86ffc4f20 Rename ZFP_VERSION_DEVELOP, remove ZFP_VERSION_RELEASE 0135c037e Merge branch 'bugfix/thread-safety' into develop (resolves silx-kit#154) 20a2efdcb Use zfp_field_blocks() in codec 5c424bbff Update CHANGELOG [skip ci] 11f992849 Enabled OpenMP with testviews e89d80383 Handle empty field in zfp_field_blocks() 0447f7e56 Make codec thread-safe b9166ad1a Add LDFLAGS to support -lomp on Mac 5190cae2d Add zfp_field_blocks() e1ac5e4ee Merge pull request silx-kit#165 from DimitriPapadopoulos/codespell 20e62c582 Fix typos found by codespell 05b3f4c56 Update fortran module name and move internal codec headers c13a6c7b9 Update bitstream.c include in cuda [skip ci] 9e78178a4 Fix include in zfpy 3674669df Update zforp install location 5fd6de39f update zfp util f56070f6a updated tests fixed additional missing includes 615e86f4b Update headers in examples and fix bad include eeac3a28a Updated cfp includes, fixed build issues c73261887 Update cmake b2366c0e7 updated inline src and moved cfp src 4aafbc81a Update hpp include guards afe6a01f9 Update includes for internal headers 013210b06 Update includes for all non-internal headers e1e4840c0 Move include files 9b0d278f8 Update where gitlab cpu tests are run 26678cded Replace stdio with iostream in testviews bb59d8457 Fix minor documentation issues 537c12052 Add compressed-array example cc2e85008 add policy mode validation checks 938ffd2e9 change exec policy params to use void* 7335959b8 Merge branch 'refactor/stream-offsets' into develop 24bcfa28b Merge branch 'develop' into refactor/stream-offsets 2d975ce89 Correct type mismatches to silence compiler warnings bf718a604 Update bitstream types in CUDA tests 9a1e3409f Introduce bitstream_{offset,size,count} types for 64-bit support b40ab53dd temporarily disable actions side of cmake test 9dcf734c8 temporarily disable actions side of cmake test 72fcac571 Add cmake version checking to tests 980155a8e Merge pull request silx-kit#162 from jonashaag/patch-1 cf7bd9eac Fix exception handling in compress_numpy 5d3ac203e Revert accidental change to ZFP_VERSION_RELEASE define 0335096e6 Fix version.h compile error dd915b95a Update version files to support intermediate version numbers 15d77178c Move memory management to internal namespace 0f06782e4 Rename word -> stream_word 1d6fbe597 Silence compiler warnings in tests f49a7fe5d Silence compiler warnings in tests baaa782ac Remove debugging code from diffusion example 76d684ded Update CMakeLists to support OpenMP with AppleClang 19b261d6c Add macros for constructing version number and string ad926b6a8 Add back references to execution section in docs f6880a6a6 Add silx-kit#150 to CHANGELOG d36f54d9b Fixes silx-kit#150 6bfd003ab Revert attempted fix for silx-kit#150 e620e546d Undo failed attempt to fix silx-kit#150 a7c6047fa Attempted fix for issue silx-kit#150 (cmocka macOS build) da4e28293 Allow setting BIT_STREAM_WORD_TYPE on make line 33065d237 Add support for generic codec in diffusion example f4e0850c6 Clarify that rounding mode, daz supported only on CPU 2b03babb8 Add conda zfp package and zarr application to docs 4a33aab52 add missing zfp field and stream tests 38e3cbbe2 Silence const compiler warnings in ppm aeb707c1d Add CUDA tests for unsupported 4D data 5fe5ed198 Change name of actions workflow ba2df4bcd move gitlab cpu tests to new system a674bf58b Remove Travis CI files fd5731846 Move status badge from travis to actions 64e5db65e Update python cmake build scripts 7ad847694 Add python build hints to tests 50774dcfd Enable cython action temporarily disable win tests d42fb0eea enable actions pytests and split py adv decompress test into bytes/memview versions afac3f94f made test output more verbose 31902956b remove unneeded test code 84fb3d880 Make array::set(0) zero-initialize array 323e3e708 Move Cache and Store to internal namespace eb6cd2873 Bug fix: reopen codec when compacting store 122918c4c Fix incorrect loop counter types in simple.c 662fc0f42 Add size_bytes() to cfp 05156f50d Replace ieeecodec with generic codec templated on scalar type 8441d7063 Fix inconsistent coding style in zfpcodec 142a11f72 Setup github actions config 5555333ae add promote/demote util tests b91dcafb4 Added field_metadata failure tests 6aec9dc42 compilation error fix de381394f Fix unused variable warning d65af032c Add link to MVAPICH2-GDR 5c991daae Add/rename top-level files for E4S compliance 99e526cd5 Document CUDA limitations 22beacb09 Document ZFP_WITH_CUDA in config file 57c50e038 Add FAQ on error distributions bbfb88db8 Clarify FAQ silx-kit#17 on violated tolerances 1cd5978fb Add printf FAQ 95dc35828 Merge pull request silx-kit#148 from vicentebolea/cmake-fix-include-dir b6f344ff4 CMAKE: ZFP_INCLUDE_DIRS avail at configure time 310e12d51 Merge pull request silx-kit#147 from vicentebolea/add-zfp-cuda-var 670368238 Update zfp-config.cmake.in f5d8c2824 Add templated encode/decode tests f65ac4434 Move cuda testing to new machine 5079b8958 Extend and include testviews in tests 2d0ba85f8 Fix view const accessors a922f6408 Clean up .travis.yml 1a4565c6f Force gcc-4.9 on Travis CI 416e19573 Require CMake 3.9 in tests af933bb99 Suppress CMake warning about unused ZFP_OMP_TESTS_ONLY f718c5616 Add nullptr_t proxy pointer constructors d83d3432c Update README build report badge bfbaa9929 Undo attempted codecov fix 1e74a04c4 Add mask parameter to header.size_bytes() 625691784 Bug fix: overflow due to subnormals (resolves silx-kit#119) 3f768fad6 Fix zfp_field bugs that confused precision and byte size ecbbf7633 Fix missing codecov uploads ef8b8791a Document C++ wrappers for low-level API 8e790cbf5 Update installation instructions 881644019 Complete citation record 0ff612eca Merge pull request silx-kit#141 from researchapps/add/github-citation cd14c0633 GitHub has recently added this standard file, CITATION.cff, that will render a sidebar link to easily copy paste bibtex information to cite the work. This should be useful for zfp 33eed2fb0 Fix missing size_t and declarations in tests c3a7b3343 Fix missing size_t types and casts 191073760 Fix C89 incompatibility in tests a85609f07 Build cmocka using prescribed build type for MSVC 149de0a54 Update cfp tests to use size_t 416d16b82 Complete size_t transition for array tests 83d572f17 Fix broken C89 support in tests 45c9e82bf Silence warnings and use size_t over uint in tests 7450b7282 Silence miscellaneous compiler warnings ce5c5b3af Silence compiler warnings 4e49b3180 Fix gtest deprecation warnings 6443612cb Merge branch 'develop' of github.com:LLNL/zfp into develop 02872e2a0 added templated encode/decode block tests 722782608 Merge branch 'refactor/64-bit-indexing' into develop 954390e19 Silence compiler warnings in tests 2a2ff3571 Update docs with new zfp_field and function signatures 28a3858b3 Silence compiler warnings in tests d97e589b6 Update examples and utils to use size_t array dimensions b756eb043 Handle missing size_t/ptrdiff_t c3672137c Update Fortran API to support 64-bit indexing 64f71dde8 Update Python API to support 64-bit indexing 5f3ad37d6 64-bit indexing: replace uint/int with size_t/ptrdiff_t 24bcaf80e Organized tests/array directory ea8124f8d merged cpp namespace into zfp namespace 01ccb95d3 Clarify constraints on rate in docs b47749f56 changed gtest version to fix compilation issues with non-gnu linux compilers 496a416c3 fixed macro expansion issue (commit issue fix) 1c5bc2ab7 fixed macro expansion issue c9adc2a4a fixed macro expansion issue 1f5fb92ab Rename Travis files 62f350340 Merge branch 'feature/const-arrays' into develop 5bdd22f37 Merge branch 'develop' into feature/const-arrays 26c5eb9df Do not reset rate in zfp::index::implicit::clear() a571d4350 Add appropriate casts around CHAR_BIT * sizeof() constructs 5c7f6ecc4 Add dispatch function for integer encoding/decoding 6cf405a27 added in const array bitstream checksum test 5f6394ee9 disable travis tests temporarily 6a7364b3c Fix docs on array serialization constraints cea4ff6ce Merge branch 'feature/unbiased-error' into develop 8a4487e75 Document ZFP_ROUND_* macros bd2b1545c Fix CUDA rounding issue due to incorrect NBMASK 3205d7219 Add rounding modes to CUDA implementation 4f3f1d4a7 Disabled travis linux testing due to new usage restrictions caf14c7f1 Added index names to test reporting a949b1c55 Added block index tests for const arrays 2968e8e0e Specialize coding for unconstrained rate 74a11efef Merge pull request silx-kit#137 from jwsblokland/bugfix/cmake 2fba7f690 CMake: (fix) OpenMP dependency. f25982add Merge branch 'misc/travis-update' into develop eb1d4c2d3 Discontinue xcode7.3 tests e5a55f762 Fix build errors 4f409922f Added const array checksum tests 97044629f Only call cudaGetDeviceProperties once. fcae077d9 Add ability to specify CUDA compilation flags. 8a4db7fb0 Added in tests for multiple precision/accuracy compression mode values fb4d7a613 Fixed uninitialized value error in test fixture 09a9f7614 Initial work on const array tests 2d92b09d9 moved version info to zfp/version.h header 6389b89d3 Implemented fixes discussed in issue silx-kit#126 12772bd48 Fix incorrect math in relative-error bound FAQ a51171f14 Document promotion/demotion of scalars 3ddbd24d5 renamed header.size() to header.size_bytes() to better clarify its functionality 6b2da922e strip out redundant CI builds 11341f46f Add new rounding mode: ZFP_ROUND_FIRST 6d24ac9f1 Fixed various CI test issues 928bbceb2 refactored GitlabCI config to be more extensible f3736ca59 Update diffusion documentation 321ce7fcd Add codec and index documentation 68099ac68 Add const_array support for expert mode 1d64a1613 Fix off-by-one error in ZFP_MAX_BITS aabe13f93 Documentation: Use checkmarks in tables 8ded86bd6 Add FAQ on C vs. Fortran order ebe66d628 Add FAQ on compressed storage size d7686bc49 Bug fix: compressed block size in reversible mode (resolves silx-kit#127) 35bc789ab Rename zfp::codec derived classes d91176121 Rename conflicting zfp_stream* codec::zfp::zfp 6b6602b6d Add zfp::codec namespace 24f9b0708 Add support for const_array in diffusion example d2932309e Fix incorrect rate granularity in FAQ c733c923e Document const_array rate granularity and zero initialization 1d38a7f02 Refactor and fix bugs in arrays, store, index, codec 6993e72da Add exception on cache overflow 93780bb1c Add size_bytes() to fixed-rate arrays 4abe3d5ca Fix incorrect cache size initialization 71d24c018 Add missing size_bytes() for block stores 4142c9995 Remove debug info bb4e567a5 Add const_array documentation 9f2b09c88 Add missing size_bytes() for block caches fee7e80eb Consolidate shape() and block_shape() functions b2816e2ef fix compiler error during cuda testing 0b4f9a3b8 Add 1D, 2D, 4D const_arrays a56a749fb Merge branch 'develop' into feature/const-arrays dd174cd21 Update documentation on exceptions 0ecdc57cd Add zfp_field layout functions 4a0d1f3eb Use zfp_bool in examples 0ceec10cc Ensure diffusionC builds with cfp ccdec24e3 Add zfp_bool documentation 53b69c4dc Document ppm example ee3c9fe23 Refactor array/cache/store to support const_array 10612d476 Exclude redundant header inclusion aa71d4ade Improve POD memory allocation 350867321 Add inclusion of missing headers 1de54120e Add zfp_config for const_array constructor 695886a76 Move install command to utils subdirectory f4e559860 Change gtest build paths (resolves silx-kit#108) ab07ab956 Remove zfp utility as install target 1fa8dbbef Add zfp utility as install target (resolves silx-kit#122) a215e19c7 Merge branch 'bugfix/omp-large-arrays' into develop 67ab4c983 Avoid Win32 size_t overflow b09d079aa Resolves silx-kit#125 1051621b7 Pick up .travis.yml fix 915e04141 Squashed commit of the following: f784bbebd Revert to OpenMP 2.0 to accommodate MSVC e525e484e Fix OpenMP 32-bit int overflow; require OpenMP 3.0 f668af3d5 Add support for querying rate, precision, accuracy d24b528e9 Fix bad link in file compression docs a96940074 Bug fix: CUDA bit streams limited to 2^31 bits 8d09ee13d Silence compiler warnings abc769647 Correct comments/code for coding partial/strided blocks 4fd729283 Rename cfparrays.*; add cfp/src/template directory 779b36653 Minor improvements to simple.c 5cefb373e Clarify zfp_read_header() documentation 7e68696db Consolidate intro and overview sections 1829523e6 added small fixes for zfp testing, new gitlab CI functionality 74364a8a4 Merge branch 'feature/cfp-references' into develop 71f13b819 Refactor cfp header API to align with accessors ccdc3ec68 Silence PGI compiler warnings 5feae4ca4 Support no alignment via ZFP_CACHE_LINE_SIZE=0 ebb172d00 Propagate zfp_private_defs to tests a048b3f58 Expose ZFP_CACHE_LINE_SIZE to address PGI compiler bug e11004ae1 Add cfp serialization documentation bf09645b6 Update Makefiles to simplify macOS builds 7eb57fa02 Clean up cfp docs 7ab1ed615 Update docs to use zfp_bool 9c6032bd8 Make cfp its own section 6f111ce21 Update cfp documentation 61f7b2caf Add zfp_bool documentation ac22c5847 Clean up merge and :c:expr: Sphinx issues 6db9cf049 Merge branch 'feature/cfp-references' into develop 661cd2aaa Add cfp multidim iterator tests dca15d47d Ensure consistent cfp parameter names and APIs 72e4fd1fe Remove unnecessary casts b2e658527 Add iterators to diffusionC; ensure C89 compatibility 88906c395 Add cfp random-access iterators and const qualifiers; refactor header 03f213bab Rename and reorder accessor members f7682e657 Refactor cfpheader to avoid circular inclusion 87b770ea1 changed booleans from int to zfp_bool type 6b8e03dd8 Added cfp header tests b20b2bb40 added header functionality to cfp 75c2a59cf Avoid importing unused cpython array for compatibility with pypy 50aa4f193 changed uint8_t and memoryview test 29d7de129 change to void, add tests similar to ensure_ndarray 5cb7a3253 remove print cython version 89b19d3f5 remove apt-get cython3 a4d6edac1 change cython3 to cython 2739f2e7a upgrade pip first 2fc75483f change back to pip 1d9524a59 remove upgrade pip b560ddcbf use pip3 instead pip 66d45d1c6 change cython3 in .travis.yml 0bed27e1d enable cython3 upgrade on xenial 3c2c06128 add cython version check in travis.sh 8269e09b2 check cython version in zfpy.pyx bf05fb43d change to void * f0f824063 add <char*> in stream_open 31d8c51c2 remove const for test a3c572a10 Update python/zfpy.pyx 14da51149 Update python/zfpy.pyx a75ef2615 replace bytes of compressed stream to uint8_t 1f4973df4 fixed missing semi-colon ee58ae344 changed cfp 4d fixed rate tests to prevent future problems a36d4063b Fixed issues with 4d checksum tests 1c3123355 Fix failing 4D cfp test due to lack of precision 29c4f5a9d Changed out of date uint references to size_t in docs 0541ec97c Added 4d cfp documentation 15187ed8b Disabled broken checksum tests 42d3c7fe8 Added cfp 4d tests a79c49305 Merge branch 'develop' into feature/const-arrays 0817b0865 Add documentation for 4D arrays a5959fe02 Use python3 with sphinx documentation 6f829dd50 Enable 4D array support in cfp 78c2c51f8 Merge branch 'develop' into feature/cfp-references c6bcb0988 Remove temporary fix to private_view::get() 2fbe0084a Merge branch 'refactor/arrays' into develop 8b794fb8b Fix ppm issues with clamping; add chroma dimensionality parameter 33149742a Add support for 1D chroma blocks in ppm 1fd3a5f80 Revise zfp_bool type for C++ and update function signatures 50b635b45 Add tests for 4D compressed arrays 635db5c5b Fix minor issues with 3D array tests 915ba2159 Fix copy-paste errors uncovered by tests bdb2623ce Fix ppm range expansion bug 5816bcde1 Add ppm example d2c844c6d Add pointer and iterator tests for views 6a544b056 Add missing const_pointer and const_iterator friends to views 8e1d8dcd1 Fix testzfp-large tolerances for new default cache size 23bb66f67 Remove obsolete 4D deserialization test 935c38937 changed ctor name 67383cc4a Correct order of arguments in cfp {ptr,iter}.distance bf58a4ad0 Prepare cfp for 4D arrays 02a403ee7 Add testzfp tests for 4D array classes fdd14c9e4 Add 4D compressed-array classes 044cbe14f Add offset dereference operator tests for pointer and iterators 35d5c8cb1 Fix copy-paste error in iterator3 9761ee91c Update docs for iterators and views cf899daf0 Fix bad typedefs in iterators 9bf999348 Refactor accessors using container template 29cbdf760 Changed cfp to use safer static casting 6bd6d7248 Change to cfp header/array typedefs to solve issue with pre gcc 4.8 fa0d09c45 add cfp_header stubs to prep for new zfp header class 5b687458d Promote all iterators to random access; prepare for view iterators 19720bf79 Clean up documentation 520596bdc Fix incorrect reads through private_view f3e1ca9a5 Fix zfp_stream_maximum_size() estimate in reversible mode ca97dfdc1 Extra cleanup & organization pass for cfp tests/docs d1d185c11 fix iteratorC formatting to match new output types 97749bd02 Add missing functionality for 2d/3d cfp_iter, move cfp fully from uint/int to size_t/ptrdiff_t 3bdb7fa31 zfpy 0.5.5 8f81ae47d Update FAQ on relative error 2dafa9f81 Update cfp pointer docs 8487b618e Add missing functionality for 2d/3d cfp_ptr d83c2c81f Fix cfp naming consistency, add missing 1d functionality 68bc279be Mention const pointer availability b5255c5a0 Update docs to reflect 64-bit support 0df472c3c Small tweak to cfp docs 2104f25cc Add const_pointer tests 97818431d Add const iterator tests 0086df3a8 Add pointer comparison tests a29e83a99 Const accessor constructors must accept const containers 3a33078ba zfpy 0.5.5-rc5 cf8740a1d zfp 0.5.5-rc4 94ac5c00f Add alignment, header tests 739ea17c0 zfpy 0.5.5rc3 61048ab23 zfpy rc2 37096f146 Update docs for new const accessors, serialization, etc. 9d0d1df3a Fixed iteratorC to match output with iterator example 1167e3d5c Docs changes: fix ptr/iter names, add missing functions, fix broken links ba0d5f46e Add zfpy-wheels long description 64f1b58af Update version 8d0f76fd2 Windows friendly setup.py 33f9c6657 Add URL 0f148ecf6 Build wheel with setup.py 35b5cafd0 Workaround for conflicting container_type declarations ad613305d Resolve conflicting container_type in private views 1c4b9d9be Replace array with container_type in views 2ecc4686f Make accessors return const_reference; add pointers to views cc332853e cfp accessor documentation first pass 27aca9c3d Fix iterator ~3u bug 20d81aa21 Add full 64-bit support to compressed arrays da4a71f2b Silence type conversion warnings f7893523f Rewrite zfp codec to use zfp::cpp templates 80b7841a2 Add C++ wrappers around low-level C API 470a743d8 Add typename to please MSVC 14 6a7ee0935 Change header API to rely on constructor e30a70a73 Replace last occurrence of stream_word_bits 45c508d00 Plug memory leak in zfp::array::construct 9548b9404 Plug memory leak in block store abc6922ee Clean up codec and use stream_alignment() 90009fd0c Add stream_alignment() function 4e6f0315d Fix using declarations for MSVC a42b52d6f Work around googletest iterator bug f6a8be00f Update compressed_data() API in cfp bc55d5e77 Fix codec constructors 4d4001e8e Remove obsolete code 81e577dd8 Refactor array serialization 24270e887 Add Boolean type 229a37df6 Respect cache size request 6f0b78e42 Move codec specializations 6e7c12b5f Use std:: prefix in memory allocation where appropriate 878b329c7 Add type traits 3539cc849 Reinstate private views 4f2525c92 Fix incorrect cache size initialization a688d9de4 Initialize array dimensions in constructor from view efb78225b Move codec from BlockStore to BlockCache 086a156ad Rename storage -> store d8b099c91 Fix codec source file names a7b5a6d52 Update tests to support new array API d2ca8ae63 Add new block storage + cache and refactor arrays + views ecd4fb496 Add specialized allocator for void* 3b12f7c08 Made zfp memory alignment a compile-time macro 91e702f73 Add missing cbegin/cend to 2D and 3D arrays b98c864b4 Update 3D references, pointers, iterators, and views a2a7a2cf0 Fix incorrect pointer2 comparisons e8e1000c8 Update 2D references, pointers, iterators, and views b05afe923 Fix inconsistent relational operators 47e4c7cea Replace 1D view_reference with new generic reference 90eff6506 Traverse array using new const iterator aacc4989a Refactor 1D references, pointers, iterators and add const versions 079c409fc Fix Cython 'Assignment to non-lvalue' errors 2d7873710 Remove trailing semicolons which Cython treats as errors a1a876c96 Fix make install clobbering existing gtest installations fc0ecac33 Optimized cfp references and arrays based on results of testing c4029cf48 Added cfp iterator example 08adb27db Fix typo in CXXFLAGS 0202b0be3 Check for undefined __STDC_VERSION__ to suppress warnings bc2fe6bf9 Add reversible mode to simple.c 1bb7955a6 Minor documentation changes 5254963d9 Added iterator tests 18f6b8ad4 Added proxy iterators bbcded585 Fix AppVeyor badge URL 74e8a145c Fix bad URLs e1b45152d Reorganize README file a05e2e529 Update license info per LLNL guidelines bcea89307 Update Appveyor project URL 05ef34110 Added tests for pointers and array flat ptr/ref 26be0ff9b Added pointer shifting/arithmetic and flat array ref/ptr accessors c8969dfa0 changed references to linear indexing 4079af78b Implemented cfp pointers 5710f2913 Removed unnecessary export_ macro. ee7ecc233 Revert "Minor optimization of lifting transform." 92fca13de Minor optimization of lifting transform. 4cb27e2a6 Fixed linker errors. aa6266927 Fixed LNK4217 linker warnings when using Visual Studio. Also removes .lib and .exp files created along executable file of a project using static zfp library. b515bd112 Fixed linker error LNK1114 when using Visual Studio. The fix required a change of name of zfp command line executable. 2ab06b3d7 hotfix: Fix wrong memset params order b1a4f8a0c set and copy added to cfp references, diffusion example updated to use new API d62a7f9e6 added get_ref to cfp arrays and get (value) to cfp refs (with associated tests) af30bdc24 Changed cfp_array initialization syntax to fix windows build issue 28decba39 cfp_arrayALL changed from raw pointer to struct wrapped pointer (prep for cfp refs) e748a9c96 Clean up code edf135f5a Add compressed block index bcf97058c Add variable rate support f80c5103c Add uncompressed block index 40ae50ce1 Return block size in codec e9f4743cd Initial pass for 3D arrays 40ef12b71 Merge branch 'develop' of github.com:LLNL/zfp into develop 814c11086 Add reversible mode to simple.c 6fe05a5d6 Minor documentation changes fa79823c7 Merge branch 'misc/checksum-gen-tool' into develop 1c6144a99 updated cython for new checksum API b82d9e836 TODO: update cython for new test utils APIs 1a32165eb Update cpp and CFP tests to conform to new checksum API e75a0b111 Extend zfpChecksumsLib API for original-input specific function (omits irrelevant parameters) 32b4637ad Checksums now support tuples (key1, key2, value), where new key2 encodes array dimension lengths. Encode, decode, endtoend all updated 93b602ce2 Checksum (key, value) lookup working for encode, decode, and endtoend tests. zfpChecksumsLib updated to handle (key, value) lookup 9e8a000ea Checksum generation working for encode, decode, endtoend tests, across {dimensionalities 1-4}x{all scalar types} 00b944b01 endtoend tests can print (key, value) = (descriptor, checksum) pairs when compiled with flag PRINT_CHECKSUMS 881d8418d Update links to zfp website 6da6eff20 updated cython for new checksum API d85b6fa48 Remove redundant CUDA h2d transfers 3119f94df add short mention of third-party tools in overview a8def9af5 adding a short note and link for h5z-zfp 068f8150f Merge pull request silx-kit#61 from maddyscientist/feature/cuda_encode_unroll 110a4945e Merge pull request silx-kit#67 from maddyscientist/feature/cuda_decode_unroll 4cfd5882f TODO: update cython for new test utils APIs 070e4e4b6 Update cpp and CFP tests to conform to new checksum API cf8c779d6 Extend zfpChecksumsLib API for original-input specific function (omits irrelevant parameters) bf577f528 Checksums now support tuples (key1, key2, value), where new key2 encodes array dimension lengths. Encode, decode, endtoend all updated 64ef0ea9f Checksum (key, value) lookup working for encode, decode, and endtoend tests. zfpChecksumsLib updated to handle (key, value) lookup 208c6bbf7 Checksum generation working for encode, decode, endtoend tests, across {dimensionalities 1-4}x{all scalar types} 680fbb941 endtoend tests can print (key, value) = (descriptor, checksum) pairs when compiled with flag PRINT_CHECKSUMS 034f37bde Fix missing CUDA test function from previous refactor commit 047da679a Merge branch 'refactor/combine-testcases' into develop 7b75e6ce6 Remove fatal fail_msg() calls from setupCompressParam() becuase it would terminate some looping tests early ec7771247 Minor test changes: print uint64 in hex format, add "ERROR: " prefix to nonfatal print statements cb784f8f1 Refactor compress/decompress, and hash bitstream/array to separate functions for re-use in endtoend tests 7c751efab Combine endtoend testcases for CUDA, similarly to past 2 commits. Also perform some refactoring across endtoend testcode a608eb9b0 Combine testcases for OpenMP endtoend tests, such that one testcase now tests 1 compression mode, varying the compression parameter (3), threadcount (3), and chunk size (3). 32fa7e76a Combine testcases for serial endtoend tests, such that one test case tests a compression mode across all 3 compression parameters, covering all compress/decompress checksum comparisons, without prematurely ending at the first failure 045ca9cbb Refactor encode/decode block special value tests (10 testcases become 1) a7e77cc1f Fix typos in CFP documentation ede3bee7b Merge branch 'develop' into feature/cuda_decode_unroll 989e1aa6c Merge pull request #1 from LLNL/develop b7dcdb019 Unroll optimization for CUDA encode scatter partial functions ae26c99ce Merge pull request silx-kit#65 from maddyscientist/feature/cuda_inline_constants 761127592 Let the compiler inline the permutation lookup table into registers rather than using __constant__ memory 4444fd309 Fix C++ undefined behavior with last commit. All tests now pass. bee1d74fa Add support for unbiased errors and tighter error bounds 9cb007ff2 CUDA optimization: unrolling optimization gather_partial functions f76320231 Fix RuntimeError using int64 in zfpy on Windows (Pull Request silx-kit#60) d488a6f69 Appveyor: build zfpy on MSVC release builds with python 2.7 and 3.5 (expect zfpy failures on MSVC) 8f1756928 Fix mixed declarations and code c0a7acc4f Update contact email 5384b5715 Merge branch 'release0.5.5' into develop git-subtree-dir: src/zfp git-subtree-split: f40868a6a1c190c802e7d8b5987064f044bf7812
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This PR adds an effective check of native compilation flags availability because it is not available for universal2 build on macos.
Related to #186