Updated references

shaunpwilkinson · Apr 10, 2018 · 9cf5245 · 9cf5245
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diff --git a/R/aphid.R b/R/aphid.R
@@ -133,7 +133,7 @@
 #'
 #'   Finn RD, Clements J & Eddy SR (2011) HMMER web server: interactive sequence
 #'   similarity searching.
-#'   \emph{Nucleic Acids Research}. \strong{39}:W29-W37. \url{http://hmmer.org/}.
+#'   \emph{Nucleic Acids Research}. \strong{39}, W29-W37. \url{http://hmmer.org/}.
 #'
 #'   Gerstein M, Sonnhammer ELL, Chothia C (1994) Volume changes in protein evolution.
 #'   \emph{Journal of Molecular Biology}, \strong{236}, 1067-1078.

diff --git a/R/data.R b/R/data.R
@@ -1,4 +1,4 @@
-#' Substutution matrices.
+#' Substitution matrices.
 #'
 #' A dataset containing several popular substitution scoring matrices
 #' for DNA and amino acids.

diff --git a/R/read.R b/R/read.R
@@ -17,7 +17,7 @@
 #' @author Shaun Wilkinson
 #' @references
 #'   Finn RD, Clements J & Eddy SR (2011) HMMER web server: interactive sequence
-#'   similarity searching. \emph{Nucleic Acids Research}. \strong{39}:W29-W37.
+#'   similarity searching. \emph{Nucleic Acids Research}. \strong{39}, W29-W37.
 #'   \url{http://hmmer.org/}.
 #'
 #'   HMMER: biosequence analysis using profile hidden Markov models.

diff --git a/R/write.R b/R/write.R
@@ -21,7 +21,7 @@
 #' @author Shaun Wilkinson
 #' @references
 #'   Finn, RD, Clements J & Eddy SR (2011) HMMER web server: interactive sequence
-#'   similarity searching. \emph{Nucleic Acids Research}. 39:W29-W37.
+#'   similarity searching. \emph{Nucleic Acids Research}. \strong{39} W29-W37.
 #'   \url{http://hmmer.org/}.
 #'
 #'   HMMER: biosequence analysis using profile hidden Markov models.

diff --git a/man/aphid.Rd b/man/aphid.Rd
diff --git a/man/readPHMM.Rd b/man/readPHMM.Rd
diff --git a/man/substitution.Rd b/man/substitution.Rd
diff --git a/man/writePHMM.Rd b/man/writePHMM.Rd