-
Notifications
You must be signed in to change notification settings - Fork 32
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Test on Python 3.12 - but only on NumPy 2 due to cbgen version constr…
…aints Update flake8 Fix flake8 errors Don't run pre-commit for NumPy 2 tests Try installing latest bio2zarr at end Replace pkg_resources with importlib.metadata
- Loading branch information
Showing
7 changed files
with
46 additions
and
11 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,23 @@ | ||
callee | ||
pre-commit | ||
pytest | ||
pytest-cov | ||
pytest-datadir | ||
pytest-mock | ||
hypothesis | ||
scikit-allel | ||
statsmodels | ||
msprime>=1.0 | ||
scikit-learn | ||
partd | ||
bed-reader | ||
rechunker | ||
cbgen > 1.0.5; platform_system != "Windows" | ||
cbgen == 1.0.1; platform_system == "Windows" | ||
yarl | ||
matplotlib | ||
asv | ||
networkx | ||
aiohttp | ||
requests | ||
graphviz |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,12 @@ | ||
numpy < 2.1 | ||
xarray | ||
dask[array] >= 2023.01.0, <= 2024.8.0 | ||
distributed >= 2023.01.0, <= 2024.8.0 | ||
dask-ml | ||
scipy | ||
typing-extensions | ||
numba | ||
zarr >= 2.10.0, != 2.11.0, != 2.11.1, != 2.11.2, < 3 | ||
fsspec != 2021.6.* | ||
scikit-learn | ||
pandas |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters