Fixing CI

sequana · Mar 11, 2022 · d9c9cff · d9c9cff
1 parent 6497338
commit d9c9cff
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Showing 2 changed files with 2 additions and 1 deletion.
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -40,7 +40,7 @@ jobs:
     - name: conda
       run: |
         conda install -c conda-forge mamba --quiet
-        mamba install -c bioconda -c conda-forge --quiet -y freebayes bwa snpeff==5.0 sambamba picard samtools
+        mamba install -c bioconda -c conda-forge --quiet -y freebayes bwa snpeff==5.0 sambamba picard samtools bamtools
 
     - name: Install dependencies
       run: |

diff --git a/sequana_pipelines/variant_calling/requirements.txt b/sequana_pipelines/variant_calling/requirements.txt
@@ -4,3 +4,4 @@
 - sambamba
 - samtools
 - snpEff
+- bamtools