Allow .fna and .faa fasta extensions

seqan · Dec 14, 2023 · 05262cd · 05262cd
1 parent d995cb5
commit 05262cd
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/mkindex_options.hpp b/src/mkindex_options.hpp
@@ -92,7 +92,7 @@ void parseCommandLine(LambdaIndexerOptions & options, int argc, char const ** ar
 
     parser.add_section("Input Options");
 
-    std::vector<std::string> extensions{"fa", "fq", "fasta", "fastq"};
+    std::vector<std::string> extensions{"fa", "fq", "fasta", "fastq", "fna", "faa"};
 #ifdef SEQAN_HAS_ZLIB
     for (auto const & ext : extensions)
         extensions.push_back(ext + ".gz");

diff --git a/src/search_options.hpp b/src/search_options.hpp
@@ -154,7 +154,7 @@ void parseCommandLine(LambdaOptions & options, int argc, char const ** argv)
 
     parser.add_section("Input options");
 
-    std::vector<std::string> extensions{"fa", "fq", "fasta", "fastq"};
+    std::vector<std::string> extensions{"fa", "fq", "fasta", "fastq", "fna", "faa"};
 #ifdef SEQAN_HAS_ZLIB
     for (auto const & ext : extensions)
         extensions.push_back(ext + ".gz");