Deep Patient Cohorts

A tool for automatically labelling discharge summaries into disease categories.

Installation

From source

# Install poetry for your system: https://python-poetry.org/docs/#installation
curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python

# Clone and move into the repo
git clone https://github.com/semantic-health/deep-patient-cohorts.git
cd deep-patient-cohorts

# Install the package with poetry
poetry install

Usage

See the notebook getting_started.ipynb.