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Minor bug fixes in SBML importer #137

Minor bug fixes in SBML importer

Minor bug fixes in SBML importer #137

Triggered via pull request August 14, 2023 14:35
Status Failure
Total duration 2h 19m 14s
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on: pull_request
Matrix: test
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1 error and 4 warnings
Julia nightly - ubuntu-latest - x64 - pull_request
Process completed with exit code 1.
Julia nightly - ubuntu-latest - x64 - pull_request
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Documentation: ../../../.julia/packages/Documenter/bYYzK/src/Utilities/Utilities.jl#L34
29 docstrings not included in the manual: PEtab.isNumber :: Tuple{AbstractString} PEtab.isNumber :: Tuple{SubString{String}} PEtab.getWord :: Tuple{String, Int64, Vector{Char}} PEtab.createODEModelFunction :: Tuple{Any, Any, Any, Any, Bool} PEtab.create_σ_h_u0_File :: Tuple{String, String, String, ModelingToolkit.ODESystem, Any, Any, Dict} PEtab.processMeasurements :: Tuple{CSV.File, CSV.File} PEtab.petabFormulaToJulia :: Tuple{String, Vector{String}, PEtab.ParametersInfo, Vector{String}, Vector{String}} PEtab.replaceVariablesWithArrayIndex :: Tuple{String, Vector{String}, PEtab.ParametersInfo, Vector{String}, Vector{String}} PEtab.XmlToModellingToolkit :: Tuple{String, AbstractString, AbstractString} PEtab.getNoiseParametersStr :: Tuple{String} PEtab.getObservableParametersStr :: Tuple{String} PEtab.JLToModellingToolkit :: Tuple{String, String, String} PEtab.create∂h∂_Function :: Tuple{String, String, Vector{String}, PEtab.ParametersInfo, Vector{String}, Vector{String}, CSV.File, Dict, Bool} PEtab.create_u0_Function :: Tuple{String, String, PEtab.ParametersInfo, Vector{String}, Any, Bool, Any} PEtab.setParamToFileValues! :: Tuple{Any, Any, PEtab.ParametersInfo} PEtab.checkDataFrameColumns :: NTuple{5, Any} PEtab.create∂σ∂_Function :: Tuple{String, String, PEtab.ParametersInfo, Vector{String}, Vector{String}, Vector{String}, CSV.File, Dict, Bool} PEtab.createDerivative_σ_h_File :: Tuple{String, String, String, ModelingToolkit.ODESystem, Any, Any, Dict} PEtab.createTopOfFunction_h :: Tuple{Vector{String}, PEtab.ParametersInfo, Vector{String}, Vector{String}} PEtab.create_h_Function :: Tuple{String, String, Vector{String}, PEtab.ParametersInfo, Vector{String}, Vector{String}, CSV.File, Dict, Bool} PEtab.transformMeasurementOrH :: Union{Tuple{T}, Tuple{T, Symbol}} where T PEtab.create_σ_Function :: Tuple{String, String, PEtab.ParametersInfo, Vector{String}, Vector{String}, Vector{String}, CSV.File, Dict, Bool} PEtab.replaceExplicitVariableWithRule :: Tuple{String, Dict} PEtab.createTopOf∂h∂_Function :: Tuple{Vector{String}, Vector{String}, Vector{String}, CSV.File} PEtab.dualToFloat :: Tuple{AbstractFloat} PEtab.dualToFloat :: Tuple{ForwardDiff.Dual} PEtab.replaceWholeWordWithNumberPrefix :: Tuple{Any, Any, Any} PEtab.wordToJuliaSyntax :: Tuple{String, Vector{String}, PEtab.ParametersInfo, Vector{String}, Vector{String}} PEtab.processParameters :: Tuple{CSV.File} These are docstrings in the checked modules (configured with the modules keyword) that are not included in @docs or @autodocs blocks.
Documentation
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
Julia 1.9 - ubuntu-latest - x64 - pull_request
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/