Update template to v0.3.0

[scverse-bot]

cookiecutter-scverse released v0.3.0.

Changes

Required actions

The Github release workflow has been updated to use trusted publishing for authentication. You'll need to configure your project on PyPI accordingly. See scverse/cookiecutter-scverse#228 and the PyPI documentation for more details.

Python version update

Python 3.11 now works with numba, so we increased the maximum tested version to Python 3.11.

Enhancements

The automatic template sync is now in regular operation.

Fixes

• Reduce font size in data frames (Function sq.pl.spatial renamed/lost? #250)
• Remove template usage docs from rendered template (now only available in cookiecutter-scverse-instance (Use sphinxcontrib-bibtex #247)
• Remove sphinx setup function (clustering function for features #246)
• Move the section about how to configure the github release workflow to the template documentation (Add sphinxcontrib-bibtex #248)
• Use coverage run instead of pytest --cov to compute test coverage (Expose cbar kwargs #244)
• Fix that the LICENSE file wasn't generated for GPL (add custom feature extractor #245)
• Fix socket warning in tests (improve img.generate_spot_crops for DL applications #240)

If there are any questions, feel free to reach out to @grst, e.g. on the scverse zulip.

Additional remarks

• unsubscribe: If you don’t want to receive these PRs in the future,
  add skip: true to template-repos.yml using a PR or,
  if you never want to sync from the template again, delete your .cruft file.
• If there are merge conflicts,
  they either show up inline (>>>>>>>) or a .rej file will have been created for the respective files.
  You need to address these conflicts manually. Make sure to enable pre-commit.ci (see below) to detect such files.
• The scverse template works best when the pre-commit.ci, readthedocs and codecov services are enabled.
  Make sure to activate those apps if you haven't already.

[codecov-commenter]

Codecov Report

Merging #773 (c980348) into main (aa60e26) will not change coverage.
The diff coverage is n/a.

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #773   +/-   ##
=======================================
  Coverage   69.87%   69.87%           
=======================================
  Files          39       39           
  Lines        5481     5481           
  Branches     1025     1025           
=======================================
  Hits         3830     3830           
  Misses       1363     1363           
  Partials      288      288