Skip to content

GitHub repository for data and code relevant to Klinges and Scheffers 2021 (American Naturalist)

Notifications You must be signed in to change notification settings

schefferslab/AmNat_Micro_Mountain_Overlap

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

2 Commits
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

Microgeography, Not Just Latitude, Drives Climate Overlap on Mountains from Tropical to Polar Ecosystems

David Klinges, dklinges9@gmail.com
Brett Scheffers, brett.scheffers@ufl.edu

Paper Press release from The American Naturalist here

Abstract

An extension of the climate variability hypothesis is that relatively stable climate, such as that of the tropics, induces distinct thermal bands across elevation that render dispersal over tropical mountains difficult compared with temperate mountains. Yet ecosystems are not thermally static in space-time, especially at small scales, which might render some mountains greater thermal isolators than others. Here we provide an extensive investigation of temperature drivers from fine to coarse scales, and we demonstrate that the degree of similarity in temperatures at high and low elevations on mountains is driven by more than just absolute mountain height and latitude. We compiled a database of 29 mountains spanning six continents to characterize thermal overlap by vertically stratified microhabitats and biomes and owing to seasonal changes in foliage, demonstrating via mixed effects modeling that micro- and mesogeography more strongly influence thermal overlap than macrogeography. Impressively, an increase of 1 m of vertical microhabitat height generates an increase in overlap equivalent to a 5.26° change in latitude. In addition, forested mountains have reduced thermal overlap—149% lower—relative to nonforested mountains. We provide evidence in support of a climate hypothesis that emphasizes microgeography as a determinant of dispersal, demographics, and behavior, thereby refining the classical theory of macroclimate variability as a prominent driver of biogeography.

Notes to Data Users

Hello! I'm glad you are interested in using this data. **Please note, many folks contributed data to this synthesis and deserve credit. See below for the list of primary data source citations. You will need to attribute (cite) these primary data sources, AS WELL AS this product, when using the database. See the CC0 license on this repository for more information. Two data sources used in the study have been provided in this repository in fully disaggregated format, per the request of the primary authors. **

For folks interested in temperature data at daily min/max/mean resolution or coarser, see the /derivative folders for each site. Or, see the compiled database (in multi-level form) in data/03_compiled.

Repository File Structure

Where original and derived datasets are stored.

Citations, manuscript files, site images, notes.

Data visualizations.

Where all code is stored.

Citations for all Primary Data Sources

Please view /docs/citations.bib for a BibTex file of all citations. You can import these citations in Zotero via File>Import, and in Mendeledy via File>Import>BibTex (*.bib).

Alaska Climate Research Center. 2019. ACIS Daily Data Browser. http://climate.gi.alaska.edu/acis_data.

Anderson, S., E.-L. Hinckley, N. Rock, and D. Ragar. 2019. Gordon Gulch Soil Temperature and Moisture. National Critical Zone Observatory. http://criticalzone.org/boulder/data/dataset/2426/.

Andrews Forest LTER Site, C. Daly, and W. McKee. 2019. Air and soil temperature data from the Reference Stand network at the Andrews Experimental Forest, 1971 to present ver 15. Environmental Data Initiative. http://dx.doi.org/10.6073/pasta/d0abe716146004268bb5f876ee42c992.

Basham, E. W., C. M. Seidl, L. R. Andriamahohatra, B. F. Oliveira, and B. R. Scheffers. 2018. Distance‐decay differs among vertical strata in a tropical rainforest. Journal of Animal Ecology 88:114–124.

Bolstad, P., and J. Love. 2019. Spring and Fall Leaf Phenology from Coweeta LTER Soil Moisture Sites SM2 & SM4, Coweeta Hydrologic Laboratory, Otto, NC, 2003-2015. Coweeta https://coweeta.uga.edu/dbpublic/dataset_details.asp?accession=1142.

Bolstad, P., J. Love, and B. Herndon. 2019. Continuously measured soil moisture, soil temperature, and air temperature from stations, Coweeta Hydrologic Laboratory. http://coweeta.uga.edu/dbpublic/dataset_details.asp?accession=1309.

Campbell, J. 2019a. Hubbard Brook Experimental Forest (USDA Forest Service): Daily Maximum and Minimum Temperature Records, 1955 - present. Hubbard Brook Ecosystem Study. http://data.hubbardbrook.org/data/dataset.php?id=59.

———. 2019b. Hubbard Brook Experimental Forest (USDA Forest Service): Daily Mean Temperature Data, 1955 - present. Hubbard Brook Ecosystem Study. http://data.hubbardbrook.org/data/dataset.php?id=58.

Chorover, J., G. Barron-Gafford, R. Minor, and N. Abramson. n.d. CZO Dataset: Bigelow Site - Soil Moisture, Soil Temperature, Electrical Conductivity, Water Potential (2014-2019). http://criticalzone.org/catalina-jemez/data/dataset/5140/.

Connor, S. E., J. Araújo, W. O. van der Knaap, and J. F. N. van Leeuwen. 2012. A long-term perspective on biomass burning in the Serra da Estrela, Portugal. Quaternary Science Reviews 55:114–124.

Euskirchen, E., S. Bret-Harte, G. Shaver, C. Edgar, and V. E. Romanovsky. 2017. Long-term release of carbon dioxide from arctic tundra ecosystems in Alaska. Ecosystems 20:960–974.

Fick, S. E., and R. J. Hijmans. 2017. WorldClim 2: new 1-km spatial resolution climate surfaces for global land areas. International Journal of Climatology 37:4302–4315.

Flerchinger, G. 2017a. AmeriFlux US-Rms RCEW Mountain Big Sagebrush. AmeriFlux; USDA Agricultural Research Service. 10.17190/AMF/1375202.

———. 2017b. AmeriFlux US-Rws Reynolds Creek Wyoming big sagebrush. AmeriFlux; USDA Agricultural Research Service. 10.17190/AMF/1375201.

Flerchinger, G. N., A. W. Fellows, M. S. Seyfried, P. E. Clark, and K. A. Lohse. 2020. Water and Carbon Fluxes Along an Elevational Gradient in a Sagebrush Ecosystem. Ecosystems 23.

González del Pliego, P., B. R. Scheffers, E. W. Basham, P. Woodcock, C. Wheeler, J. J. Gilroy, C. A. Medina Uribe, et al. 2016. Thermally buffered microhabitats recovery in tropical secondary forests following land abandonment. Biological Conservation 201:385–395.

Goulden, M. 2007. AmeriFlux US-SCd Southern California Climate Gradient - Sonoran Desert. AmeriFlux; University of California - Irvine. 10.17190/AMF/1419505.

———. 2018. Measurement of Energy, Carbon and Water Exchange Along California Climate Gradients. https://www.ess.uci.edu/~california/.

Graae, B. J., P. D. Frenne, A. Kolb, J. Brunet, O. Chabrerie, K. Verheyen, N. Pepin, et al. 2012. On the use of weather data in ecological studies along altitudinal and latitudinal gradients. Oikos 121:3–19.

Groffman, P. 2015. Soil moisture and temperature along an elevation gradient at the Hubbard Brook Experimental Forest, 2010 - present. https://doi.org/10.6073/pasta/7409e6255a71e18f6d0c4b726f68b65f.

Haeni, M., G. von Arx, A. Gessler, E. Graf Pannatier, J. L. Innes, P. Jakob, M. Jetel, et al. 2016. Long-term forest meteorological data from the Long-term Forest Ecosystem Research Programme (LWF) in Switzerland, from 1996-2016. PANGAEA. https://doi.pangaea.de/10.1594/PANGAEA.868390.

Hinkel, K. M. 2009. Soil Temperatures for Happy Valley and Barrow, Alaska, USA. UCAR/NCAR - Earth Observing Laboratory. https://doi.org/10.5065/D6PZ56X8.

Hu, Y., Z. Ding, Z. Jiang, Q. Quan, K. Guo, L. Tian, H. Hu, et al. 2018. Birds in the Himalayas: What drives beta diversity patterns along an elevational gradient? Ecology and Evolution 8:11704–11716.

Hu, Y., K. Jin, Z. Huang, Z. Ding, J. Liang, X. Pan, H. Hu, et al. 2017. Elevational patterns of non-volant small mammal species richness in Gyirong Valley, Central Himalaya: Evaluating multiple spatial and environmental drivers. Journal of Biogeography 44:2764–2777.

Janzen, D. H. 1967. Why Mountain Passes are Higher in the Tropics. The American Naturalist 101:233–249.

Litvak, M. 2016a. AmeriFlux US-Vcm Valles Caldera Mixed Conifer. AmeriFlux; University of New Mexico. 10.17190/AMF/1246121. ———. 2016b. AmeriFlux US-Vcp Valles Caldera Ponderosa Pine. AmeriFlux; University of New Mexico. 10.17190/AMF/1246122. Mora, C., G. T. Vieira, and M. J. Alcoforado. 2001. Daily minimum air temperatures in the Serra da Estrela, Portugal. Finisterra 36. 10.18055/Finis1647.

National Weather Service. 2019. National Weather Service Snow Depth Data. https://w2.weather.gov/climate/xmacis.php?wfo=boi. Oechel, W. 2016. AmeriFlux US-HVa Happy Valley. United States: N. p. 10.17190/AMF/1246064.

Ragar, D. 2019. CZO Dataset: Betasso - Air Temperature, Climate, Meteorology (2009-2017) - LIVE Betasso Meteorological Data (BT_Met). http://criticalzone.org/boulder/data/dataset/2821/.

Rebetez, M., G. von Arx, A. Gessler, E. G. Pannatier, J. L. Innes, P. Jakob, M. Jetel, et al. 2018. Meteorological data series from Swiss long-term forest ecosystem research plots since 1997. Annals of Forest Science 75:41.

Richardson, A. D., A. S. Bailey, E. G. Denny, C. W. Martin, and J. O’keefe. 2006. Phenology of a northern hardwood forest canopy. Global Change Biology 12:1174–1188.

Schaap, M., K. Condon, M. Durcki, and M. Losleben. 2019. CZO Dataset: Jemez 2011 Burned ZOB - Soil Moisture, Soil Temperature, Electrical Conductivity, Water Potential (2011-2019). http://criticalzone.org/catalina-jemez/data/dataset/3790/.

Scheffers, B. R., B. L. Phillips, W. F. Laurance, N. S. Sodhi, A. Diesmos, and S. E. Williams. 2013. Increasing arboreality with altitude: a novel biogeographic dimension. Proceedings of the Royal Society of London B: Biological Sciences 280:20131581.

Scheffers, B. R., L. Shoo, B. Phillips, S. L. Macdonald, A. Anderson, J. VanDerWal, C. Storlie, et al. 2017. Vertical (arboreality) and horizontal (dispersal) movement increase the resilience of vertebrates to climatic instability. Global Ecology and Biogeography 26:787–798.

Senior, R. A., J. K. Hill, P. González Del Pliego, L. K. Goode, and D. P. Edwards. 2018. Data from: A pantropical analysis of the impacts of forest degradation and conversion on local temperature. Ecology and Evolution, Dryad Digital Repository, http://datadryad.org/stash/dataset/doi:10.5061/dryad.g4000.

Shaver, G. 2016. Daily weather data file for Arctic Tundra LTER site at Toolik Lake, Arctic LTER 1999. Environmental Data Initiative. https://portal.lternet.edu/nis/mapbrowse?packageid=knb-lter-arc.1538.1.

Shirk, P. L., D. W. Linden, D. A. Patrick, K. M. Howell, E. B. Harper, and J. R. Vonesh. 2014. Impact of habitat alteration on endemic Afromontane chameleons: evidence for historical population declines using hierarchical spatial modelling. Diversity and Distributions 20:1186–1199.

Smithson, M., and J. Verkuilen. 2006. A better lemon squeezer? Maximum-likelihood regression with beta-distributed dependent variables. Psychological Methods 11:54–71.

Swedish Meteorological and Hydrological Institute. 2019. Historical Snow Depth Records. Swedish Meteorological and Hydrological Institute. https://www.smhi.se/en/weather/sweden-weather/snow-depth/.

Templer, P., R. Sanders-DeMott, and A. Bailey. 2019. Climate Change Across Seasons Experiment (CCASE) Sapling Study at the Hubbard Brook Experimental Forest: Spring Phenology. Environmental Data Initiative. https://doi.org/10.6073/pasta/73f68509156bb5ebbe94eb25f57cdcd5.

U.S. Climate Data. 2019a. Climate Bishop - California and Weather averages Bishop - Weather history december 2012. United States Weather Service. https://www.usclimatedata.com/climate/bishop/california/united-states/usca0103/2012/12.

———. 2019b. Climate Fresno - California and Weather averages Fresno - Weather history february 2010. United States Weather Service. https://www.usclimatedata.com/climate/fresno/california/united-states/usca2234/2010/2.

Walker, M. D., D. A. Walker, and N. A. Auerbach. 1994. Plant communities of a tussock tundra landscape in the Brooks Range Foothills, Alaska. Journal of Vegetation Science 5:843–866.

Ward, S. E. 2018. Microclimate and Phenology at the H.J. Andrews Experimental Forest. University of Oregon Scholar’s Bank 83. http://hdl.handle.net/1794/23916.

About

GitHub repository for data and code relevant to Klinges and Scheffers 2021 (American Naturalist)

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages