- Python3
- Matplotlib
- Make a fasta/fastq index with samtools.
- List the index files:
$ cat fai.fofn
reads.1.fasta.fai Shadowfax
reads.2.fasta.fai Snowmane
reads.3.fasta.fai Bill
python3 podplot.py fai.fofnorpython3 podplot.py -g 1500000000 fai.fofn
-
Notifications
You must be signed in to change notification settings - Fork 3
schatzlab/PodPlot
Folders and files
| Name | Name | Last commit message | Last commit date | |
|---|---|---|---|---|
Repository files navigation
About
Plot coverage or percent of total sequence as a function of minimum read length
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published