A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
The usage of this workflow is described in the Snakemake Workflow Catalog.
If you use this workflow in a paper, don't forget to give credits to the authors by citing the URL of this (original) repository and its DOI (see above).
poetry install --with dev
# Format the Snakefile
poetry run snakefmt workflow/Snakefile workflow/rules/ workflow/scripts
# Run test workflow and generate coverage report
poetry run pytest