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Update README.md
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Clarify dependencies
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trstickland authored Feb 14, 2020
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Expand Up @@ -23,11 +23,6 @@ Python3 script to manipulate FASTA and FASTQ (and other format) files, plus API
## Installation
There are a number of ways to install Fastaq and details are provided below. If you encounter an issue when installing Fastaq please contact your local system administrator. If you encounter a bug please log it [here](https://github.com/sanger-pathogens/Fastaq/issues) or email us at path-help@sanger.ac.uk.

### Dependencies
* samtools
* gzip
* gunzip

### Using pip3

`pip3 install pyfastaq`
Expand All @@ -48,6 +43,12 @@ The test can be run from the top level directory:

`python3 setup.py test`

### Runtime dependencies

These must be available in your path at run time:
* samtools
* gzip
* gunzip

## Usage

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