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Fix cram_dependent_data_series when FN is used. #1314

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Fix cram_dependent_data_series when FN is used. #1314

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7 changes: 7 additions & 0 deletions cram/cram_decode.c
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Original file line number Diff line number Diff line change
Expand Up @@ -668,6 +668,13 @@ int cram_dependent_data_series(cram_fd *fd,
s->data_series |= CRAM_CF | CRAM_NF;
if (s->data_series & (CRAM_BA | CRAM_QS | CRAM_BB | CRAM_QQ))
s->data_series |= CRAM_BF | CRAM_CF | CRAM_RL;
if (s->data_series & CRAM_FN) {
// The CRAM_FN loop checks for reference length boundaries,
// which needs a working seq_pos. Some fields are fixed size
// irrespective of if we decode (BS), but others need to know
// the size of the string fetched back (SC, IN, BB).
s->data_series |= CRAM_SC | CRAM_IN | CRAM_BB;
}

orig_ds = s->data_series;

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