new indexing algo/fmt; NOT working yet

samtools · Jun 22, 2012 · 38296d0 · 38296d0
1 parent 9ea927a
commit 38296d0
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Showing 11 changed files with 249 additions and 259 deletions.
diff --git a/bamidx.c b/bamidx.c
@@ -15,6 +15,6 @@ int main_bamidx(int argc, char *argv[])
        writes a new index with extension '.csi'.\n\n");
 		return 1;
 	}
-	bam_index_build(argv[optind], 0, min_shift);
+	bam_index_build(argv[optind], min_shift);
 	return 0;
 }
diff --git a/bcfidx.c b/bcfidx.c
@@ -12,6 +12,6 @@ int main_bcfidx(int argc, char *argv[])
 		fprintf(stderr, "Usage: bamidx [-s minShift] <in.bam>\n");
 		return 1;
 	}
-	bcf_index_build(argv[optind], 0, min_shift);
+	bcf_index_build(argv[optind], min_shift);
 	return 0;
 }