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make VariantContextBuilder safer#1344

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yfarjoun merged 13 commits intomastersamtools/htsjdk:masterfrom yf_make_variantContextBuilder_safersamtools/htsjdk:yf_make_variantContextBuilder_saferCopy head branch name to clipboardJul 16, 2019

+497-136

Commits

Commits on Apr 3, 2019

• -added some testing around VariantContextBuilder, to show that many usepatterns yield unexpected results.

  

  Yossi Farjoun

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Commits on Apr 5, 2019

• - tests were bad....results now are not as scary.

  

  Yossi Farjoun

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  dc03bb7

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• - more tests to cover bad useages

  

  Yossi Farjoun

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  5d310a2

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• - fixes broken tests except for the genotype context ones

  

  Yossi Farjoun

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  143fc8e

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• - fixes broken GenotypeContext test.

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  Yossi Farjoun

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Commits on Apr 6, 2019

• - had a problem with unfiltered versus filtered with empty maps.

  

  Yossi Farjoun

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  46e5b9c

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• - fixed straggling failing test

  

  Yossi Farjoun

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Commits on Apr 8, 2019

• - responding to review comments

  

  Yossi Farjoun

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Commits on May 10, 2019

• - added a test from issue #1365

  

  Yossi Farjoun

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Commits on Jun 4, 2019

• - responding to review comments

  

  Yossi Farjoun

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Commits on Jul 15, 2019

• - responded to reivew comments.

  

  Yossi Farjoun

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  266a62f

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Commits on Jul 16, 2019

• - made comment and test clearer

  

  Yossi Farjoun

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  0a03bda

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• - oops typo in unrelated file

  

  Yossi Farjoun

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