Build and test on java 11 #1291
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@cmnbroad Could you take a look at this when you get a chance? It has a bunch of gradle changes because the |
Codecov Report
@@ Coverage Diff @@
## master #1291 +/- ##
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+ Coverage 67.495% 67.511% +0.016%
Complexity 8150 8150
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Files 558 558
Lines 33364 33396 +32
Branches 5608 5632 +24
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+ Hits 22519 22546 +27
- Misses 8657 8666 +9
+ Partials 2188 2184 -4
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| url 'http://broadinstitute.github.io/picard' | ||
| id = 'picard' | ||
| name = 'Picard Team' | ||
| url = 'http://broadinstitute.github.io/picard' |
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Unrelated and tangential, but this seems like ancient history. And if you look there, you see nothing about htsjdk.
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Yeah, I noticed that too but decided to leave it for later... I'll open a follow up to change it. Not sure to what though...
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| /** | ||
| * Sign non-snapshot releases with our secret key. This should never need to be invoked directly. | ||
| */ | ||
| signing { | ||
| required { isRelease && gradle.taskGraph.hasTask("uploadArchives") } | ||
| required { isRelease && gradle.taskGraph.hasTask("publishHtsjdkPublicationToMavenRepository") } |
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Is the uppercase 'H' in "Htsjdk" significant? It seems to work ok locally (it winds up in "htsjdk"ok).
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I don't believe it's meaningful. I think it's case insensitive but the examples on the gradle website use camel case so I did as well.
| @@ -28,7 +28,7 @@ APP_NAME="Gradle" | |||
| APP_BASE_NAME=`basename "$0"` | |||
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| # Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script. | |||
| DEFAULT_JVM_OPTS="" | |||
| DEFAULT_JVM_OPTS='"-Xmx64m"' | |||
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Wondering what triggered this change ?
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Rebuilding the wrapper triggered it. I think they reduced gradle's memory requirement so they added a small default one.
* Changes to allow htsjdk to build and run on Java 11. * Fix broken javadoc that fail in 11 * Fix String.lines conflict: see scala/bug#11125 * Changes to the build: * Update gradle 4.8.1 -> 5.2.1 * Update shadow plugin 2.0.4 -> 4.0.4 * Update scala test plugin 0.22 -> 0.23 * Switch publishing plugin from maven -> maven-publish * Add Java 11 to travis matrix Co-authored-by: Louis Bergelson <louisb@broadinstitute.org>
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Description
This is an extension of #1269 which resolves some problems with the build in gradle 5+
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