Replaced several for-each loops in VariantContext.Make() based on HaplotypeCaller profiling#1234

Merged

lbergelson merged 3 commits intosamtools:masterfrom jamesemery:je_speedupVariantContextBuilding

Dec 4, 2018

+31-19

Commits on Dec 4, 2018

Replaced several for-each loops in VariantContext.Make() codepath with slightly faster alternatives where it made a difference for the Haplotype Caller.
jamesemery
committed
responded to first round of comments
jamesemery
committed
sorcery
jamesemery
committed