Allow VCF index creation for stream output.

samtools · Jan 21, 2019 · 2cc5c6d · 2cc5c6d
1 parent e16ca2a
commit 2cc5c6d
Showing 1 changed file with 0 additions and 3 deletions.
diff --git a/src/main/java/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilder.java b/src/main/java/htsjdk/variant/variantcontext/writer/VariantContextWriterBuilder.java
@@ -476,9 +476,6 @@ else if (STREAM_TYPES.contains(this.outType))
                 writer = createBCFWriter(outPath, outStreamFromFile);
                 break;
             case VCF_STREAM:
-                if (options.contains(Options.INDEX_ON_THE_FLY))
-                    throw new IllegalArgumentException("VCF index creation not supported for stream output.");
-
                 writer = createVCFWriter(null, outStreamFromFile);
                 break;
             case BCF_STREAM: