Merge pull request #48 from samply/feature/ig-buildable

Buildable version for release 0.1.0

.travis.yml

@@ -1,8 +1,20 @@
-language: java
+language: ruby
+jdk: openjdk11
+rvm: 2.5
+before_install: gem install jekyll
 before_script:
-- wget https://fhir.github.io/latest-ig-publisher/org.hl7.fhir.validator.jar -O validator.jar
-- wget http://hl7.org/fhir/uv/ips/2019Sep/validator.pack -O ips.pack
+- wget -q https://fhir.github.io/latest-ig-publisher/org.hl7.fhir.validator.jar -O validator.jar
+- wget -q http://hl7.org/fhir/uv/ips/2019Sep/validator.pack -O ips.pack
 script:
-- zip -j ig.zip extension/* profile/* terminology/codesystem/* terminology/valueset/*
-- unzip ig.zip -d target
-- java -jar validator.jar -version 4.0.1 -ig ips.pack -ig target examples
+- mkdir input-cache
+- wget -q https://fhir.github.io/latest-ig-publisher/org.hl7.fhir.publisher.jar -O input-cache/org.hl7.fhir.publisher.jar
+- JAVA_TOOL_OPTIONS=-Dfile.encoding=UTF-8
+- java -jar input-cache/org.hl7.fhir.publisher.jar -ig bbmri-ig/ig.ini
+- java -jar validator.jar -version 4.0.1 -ig ips.pack -ig bbmri-ig/output/validator-de.bbmri.fhir.pack bbmri-ig/input/examples
+deploy:
+  provider: releases
+  api_key: $GITHUB_TOKEN
+  file: bbmri-ig/output/validator-de.bbmri.fhir.pack
+  skip_cleanup: true
+on:
+    tags: true

README.md

@@ -2,12 +2,12 @@
 
 # BBMRI FHIR® Implementation Guide
 
-[Profile Overview](https://github.com/samply/bbmri-fhir-ig/blob/master/implementationGuide/Overview.md)
+[Profile Overview](https://github.com/samply/bbmri-fhir-ig/blob/master/bbmri-ig/input/pagecontent/overview.md)
 
-![Overview profiles](https://github.com/samply/bbmri-fhir-ig/blob/master/implementationGuide/GBA-DatamodellFHIR_V05.png)
+![Overview profiles](https://github.com/samply/bbmri-fhir-ig/blob/master/bbmri-ig/input/images/GBA-DatamodellFHIR_V05.png)
 
-[Mappings to other projects](https://github.com/samply/bbmri-fhir-ig/blob/master/implementationGuide/Mappings.md)
+[Mappings to other projects](https://github.com/samply/bbmri-fhir-ig/blob/master/bbmri-ig/input/pagecontent/mappings.md)
 
-[Referenced Implementation Guides](https://github.com/samply/bbmri-fhir-ig/blob/master/implementationGuide/ReferencedIGS.md)
+[Referenced Implementation Guides](https://github.com/samply/bbmri-fhir-ig/blob/master/bbmri-ig/input/pagecontent/referencedIGs.md)
 
-[Validator Instructions](https://github.com/samply/bbmri-fhir-ig/blob/master/implementationGuide/Validation.md)
+[Validator Instructions](https://github.com/samply/bbmri-fhir-ig/blob/master/bbmri-ig/input/pagecontent/Validation.md)

bbmri-ig/.gitignore

@@ -0,0 +1,5 @@
+/input/images/Thumbs.db
+/input-cache/*
+temp
+template
+output

bbmri-ig/_genonce.bat

@@ -0,0 +1,3 @@
+@SET JAVA_TOOL_OPTIONS=-Dfile.encoding=UTF-8
+JAVA -jar input-cache/org.hl7.fhir.publisher.jar -ig ig.ini
+@PAUSE

bbmri-ig/_updatePublisher.bat

@@ -0,0 +1,5 @@
+@MKDIR input-cache
+@ECHO "Downloading most recent publisher - it's ~100 MB, so this may take a bit
+@POWERSHELL -command (new-object System.Net.WebClient).DownloadFile(\"https://fhir.github.io/latest-ig-publisher/org.hl7.fhir.publisher.jar\",\"input-cache\org.hl7.fhir.publisher.jar\")
+@ECHO "Done"
+@PAUSE

bbmri-ig/classnotes/cibuild.txt

@@ -0,0 +1,27 @@
+1. Log into your github.com (registering if necessary)
+2. Go to http://github.com/fhir/sample-ig
+3. Select "Fork" and fork to your local github repository
+4. In your forked github.com repository, go to "settings", "Webhooks"
+5. Select "Add webhook"
+- Set the payload URL to: https://us-central1-fhir-org-starter-project.cloudfunctions.net/ig-commit-trigger
+- Set the content-type to application/json
+- Leave the secret blank
+- Enable SSL verification
+- "Just the 'push' event"
+- Active
+- Click on "Add webhook"
+6. Log onto http://chat.fhir.org
+7. Subscribe to the committers/notification branch
+- Click on the little "gear" icon beside "Streams"
+- Select "All streams" and find "Committers/notification"
+- Subscribe to it
+
+If you clone your fork locally using Git and make changes, then commit and push them to your web repository
+OR if you make changes directly on your web repository, then
+a few minutes after your change in the notifications stream, you should see something like this:
+lmckenzi/sample-ig: master rebuilt
+Commit: Changed id (Lloyd McKenzie) :thumbs_up:
+Details: build logs | published | qa: broken links = 1, errors = 15, warn = 3, info = 0
+
+You can use the links to see the logs, published version and the qa
+

bbmri-ig/ig.ini

@@ -0,0 +1,13 @@
+[IG]
+ig = input/de.bbmri.fhir.json
+template = hl7.fhir.template
+usage-stats-opt-out = false
+copyrightyear = 2019+
+license = CC-BY-SA-4.0
+version = 0.1.0
+ballotstatus = CI Build
+fhirspec = http://build.fhir.org/
+#excludexml = Yes
+#excludejson = Yes
+#excludettl = Yes
+#excludeMaps = Yes

bbmri-ig/input/de.bbmri.fhir.json

@@ -0,0 +1,84 @@
+{
+  "resourceType" : "ImplementationGuide",
+  "id" : "de.bbmri.fhir",
+  "url" : "https://fhir.bbmri.de/ImplementationGuide/de.bbmri.fhir",
+  "name" : "BBMRI_DE_IG",
+  "title" : "BBMRI.de Implementation Guide",
+  "status" : "draft",
+  "experimental" : true,
+  "publisher" : "BBMRI.de",
+  "contact" : [
+    {
+      "telecom" : [
+        {
+          "system" : "url",
+          "value" : "bbmri.de"
+        },
+        {
+          "system" : "email",
+          "value" : "feedback@germanbiobanknode.de"
+        }
+      ]
+    }
+  ],
+  "description" : "Profiles for the GBA/BBMRI.de project",
+  "jurisdiction" : [
+    {
+      "coding" : [
+        {
+          "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
+          "code" : "001"
+        }
+      ]
+    }
+  ],
+  "packageId" : "de.bbmri.fhir",
+  "license" : "CC-BY-SA-4.0",
+  "fhirVersion" : [
+    "4.0.1"
+  ],
+  "definition" : {
+    "page" : {
+      "nameUrl" : "toc.html",
+      "title" : "Table of Contents",
+      "generation" : "html",
+      "page" : [
+        {
+          "nameUrl" : "index.html",
+          "title" : "MyIG Home Page",
+          "generation" : "html"
+        },
+        {
+          "nameUrl" : "overview.html",
+          "title" : "Overview",
+          "generation" : "markdown"
+        },
+        {
+          "nameUrl" : "spec.html",
+          "title" : "Detailed Specification",
+          "generation" : "markdown"
+        },
+        {
+          "nameUrl" : "mappings.html",
+          "title" : "Mappings",
+          "generation" : "markdown"
+        },
+        {
+          "nameUrl" : "referencedIGs.html",
+          "title" : "Referenced IGs",
+          "generation" : "markdown"
+        },
+        {
+          "nameUrl" : "downloads.html",
+          "title" : "Useful Downloads",
+          "generation" : "html"
+        },
+        {
+          "nameUrl" : "changes.html",
+          "title" : "IG Change History",
+          "generation" : "html"
+        }
+      ]
+    }
+  }
+}

bbmri-ig/input/ignoreWarnings.txt

@@ -0,0 +1,6 @@
+// Add warning and/or information messages here after you've confirmed that they aren't really a problem
+// (And include comments like this justifying why)
+
+// We define the version on a global basis, so don't need it on the individual source definitions
+WARNING: http://hl7.org/fhir/uv/myig/StructureDefinition/ext-myExtension: Profiles SHOULD state their own version
+WARNING: http://hl7.org/fhir/uv/myig/StructureDefinition/somepatientprofile: Profiles SHOULD state their own version

bbmri-ig/input/includes/menu.xml

@@ -0,0 +1,32 @@
+<ul xmlns="http://www.w3.org/1999/xhtml" class="nav navbar-nav">
+  <li><a href="index.html">IG Home</a></li>
+  <li><a href="toc.html">Table of Contents</a></li>
+  <li><a href="overview.html">Profile Overview</a></li>
+  <li class="dropdown">
+    <a data-toggle="dropdown" href="#" class="dropdown-toggle">References<b class="caret">
+      </b>
+    </a>
+    <ul class="dropdown-menu">
+      <li>
+        <a href="mappings.html">Mappings</a>
+      </li>
+	  <li>
+        <a href="referencedIGs.html">Referenced IGs</a>
+      </li>
+    </ul>
+  </li>
+  <li><a href="artifacts.html">Artifact Index</a></li>
+  <li class="dropdown">
+    <a data-toggle="dropdown" href="#" class="dropdown-toggle">Support<b class="caret">
+      </b>
+    </a>
+    <ul class="dropdown-menu">
+      <li>
+        <a target="_blank" href="{{site.data.fhir.path}}index.html">FHIR Spec <img src="external.png" style="text-align: baseline"/></a>
+      </li>
+      <li>
+        <a href="downloads.html">Downloads</a>
+      </li>
+    </ul>
+  </li>
+</ul>