Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Feat/smooth action #508

Closed
wants to merge 92 commits into from
Closed

Feat/smooth action #508

wants to merge 92 commits into from

Commits on Aug 15, 2023

  1. fix: IDService temporary id range

    @cmhulbert
    cmhulbert committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    b7812b8 View commit details
    Browse the repository at this point in the history

  2. feat: don't use (and remove) random array access

    @cmhulbert
    cmhulbert committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    fc0a691 View commit details
    Browse the repository at this point in the history

  3. fix: return after repaint without interval

    @cmhulbert
    cmhulbert committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    e56b071 View commit details
    Browse the repository at this point in the history

  4. feat(wip): smooth action

    @cmhulbert
    cmhulbert committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    bffcf2d View commit details
    Browse the repository at this point in the history

  5. feat: initial working implementation of smoothAction

    @cmhulbert
    cmhulbert committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    0cbf8b5 View commit details
    Browse the repository at this point in the history

  6. fix: don't duplicate highest res scale for new label sources

    @cmhulbert
    cmhulbert committed Aug 15, 2023
    Configuration menu
    Copy the full SHA
    978e9b5 View commit details
    Browse the repository at this point in the history

Commits on Aug 16, 2023

  1. perf: apply mask

    @cmhulbert
    cmhulbert committed Aug 16, 2023
    Configuration menu
    Copy the full SHA
    1504adc View commit details
    Browse the repository at this point in the history

  2. feat: progress bar for smooth action, cancel after apply

    @cmhulbert
    cmhulbert committed Aug 16, 2023
    Configuration menu
    Copy the full SHA
    2abc5db View commit details
    Browse the repository at this point in the history

Commits on Aug 17, 2023

  1. feat: add blocking, parallel applyMask

    @cmhulbert
    cmhulbert committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    b53f920 View commit details
    Browse the repository at this point in the history

  2. perf: cleanup, use FastGauss

    @cmhulbert
    cmhulbert committed Aug 17, 2023
    Configuration menu
    Copy the full SHA
    c1a0693 View commit details
    Browse the repository at this point in the history

Commits on Aug 19, 2023

  1. fix: mesh export working again

    @cmhulbert
    cmhulbert committed Aug 19, 2023
    Configuration menu
    Copy the full SHA
    f7657fe View commit details
    Browse the repository at this point in the history

Commits on Aug 21, 2023

  1. fix: improve parallel mask apply

    @cmhulbert
    cmhulbert committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    31c57c7 View commit details
    Browse the repository at this point in the history

  2. refactor: prefer job over scope 

    perf: remove intermediate converters where possible, don't shutdown scope or executor if not necessary

perf: extend value
    @cmhulbert
    cmhulbert committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    7b78e53 View commit details
    Browse the repository at this point in the history

  3. perf: improve label aggregation

    @cmhulbert
    cmhulbert committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    48795e9 View commit details
    Browse the repository at this point in the history

  4. fix: cleanup executor services when done

    @cmhulbert
    cmhulbert committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    6920b70 View commit details
    Browse the repository at this point in the history

  5. feat: add RAI converters

    @cmhulbert
    cmhulbert committed Aug 21, 2023
    Configuration menu
    Copy the full SHA
    5d358c6 View commit details
    Browse the repository at this point in the history

Commits on Aug 22, 2023

  1. ci: don't even attempt to sign macOS pacakges for now

    @cmhulbert
    cmhulbert committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    d05126f View commit details
    Browse the repository at this point in the history

  2. chore: cleanup

    @cmhulbert
    cmhulbert committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    e4ab671 View commit details
    Browse the repository at this point in the history

  3. fix: don't depend on /

    @cmhulbert
    cmhulbert committed Aug 22, 2023
    Configuration menu
    Copy the full SHA
    215ff58 View commit details
    Browse the repository at this point in the history

Commits on Aug 23, 2023

  1. fix: trailling whitespace is not always valid for dataset names

    @cmhulbert
    cmhulbert committed Aug 23, 2023
    Configuration menu
    Copy the full SHA
    4301beb View commit details
    Browse the repository at this point in the history

  2. feat: improve mesh export to obj, include material

    @cmhulbert
    cmhulbert committed Aug 23, 2023
    Configuration menu
    Copy the full SHA
    9bad502 View commit details
    Browse the repository at this point in the history

  3. fix: canvas was ignored during smoothing

    @cmhulbert
    cmhulbert committed Aug 23, 2023
    Configuration menu
    Copy the full SHA
    d6a75f6 View commit details
    Browse the repository at this point in the history

  4. fix: load from old h5 source metadata format

    @cmhulbert
    cmhulbert committed Aug 23, 2023
    Configuration menu
    Copy the full SHA
    41e927b View commit details
    Browse the repository at this point in the history

Commits on Aug 24, 2023

  1. fix: only explicitly exit process if necessary (midi was used) 

    Specifically this was necessary to ensure tests don't hang during CI
    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    a264b67 View commit details
    Browse the repository at this point in the history

  2. feat: alert exception, but don't return error code 

    On windows, this results in an additional popup that was not desirable
    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    e33bed0 View commit details
    Browse the repository at this point in the history

  3. build: remove SNAPSHOT deps

    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    9f13444 View commit details
    Browse the repository at this point in the history

  4. feat: undo headless tests, they recently stopped working on CI (only … 

    …there...)
    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    8af2294 View commit details
    Browse the repository at this point in the history

  5. fix(test): compile error

    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    53e7262 View commit details
    Browse the repository at this point in the history

  6. feat!: remove inflate

    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    360083b View commit details
    Browse the repository at this point in the history

  7. feat: change mesh setting defaults

    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    f3484d8 View commit details
    Browse the repository at this point in the history

  8. feat: change screen scale defaults

    @cmhulbert
    cmhulbert committed Aug 24, 2023
    Configuration menu
    Copy the full SHA
    98e7140 View commit details
    Browse the repository at this point in the history

Commits on Aug 25, 2023

  1. refactor!: rename methods

    @cmhulbert
    cmhulbert committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    7f5d988 View commit details
    Browse the repository at this point in the history

  2. feat: ensure N5Readers are valid, and N5Writers are writable before c… 

    …aching
    @cmhulbert
    cmhulbert committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    5981ef9 View commit details
    Browse the repository at this point in the history

  3. feat: better handle unavailable containers

    @cmhulbert
    cmhulbert committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    74e1fab View commit details
    Browse the repository at this point in the history

  4. feat: support source state removal by exception handling

    @cmhulbert
    cmhulbert committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    c6a6f47 View commit details
    Browse the repository at this point in the history

  5. feat: select all by default

    @cmhulbert
    cmhulbert committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    a6f50a7 View commit details
    Browse the repository at this point in the history

  6. fix: don't queue unnecessarily until paintable

    @cmhulbert
    cmhulbert committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    b177fc3 View commit details
    Browse the repository at this point in the history

  7. Merge pull request saalfeldlab#502 from cmhulbert/feat/smoothAction 

    Feat/smooth action
    @cmhulbert
    cmhulbert committed Aug 25, 2023
    Configuration menu
    Copy the full SHA
    b6eac3d View commit details
    Browse the repository at this point in the history

Commits on Aug 29, 2023

  1. feat: add 1.0 back to default scales

    @cmhulbert
    cmhulbert committed Aug 29, 2023
    Configuration menu
    Copy the full SHA
    ca9dfc6 View commit details
    Browse the repository at this point in the history

  2. feat: cache by default

    @cmhulbert
    cmhulbert committed Aug 29, 2023
    Configuration menu
    Copy the full SHA
    9329876 View commit details
    Browse the repository at this point in the history

  3. feat: streamline n5 container caching, and separate open vs. create w… 

    …riters where possible
    @cmhulbert
    cmhulbert committed Aug 29, 2023
    Configuration menu
    Copy the full SHA
    d6bf6df View commit details
    Browse the repository at this point in the history

  4. feat: prompt for location if dataset not found

    @cmhulbert
    cmhulbert committed Aug 29, 2023
    Configuration menu
    Copy the full SHA
    9914301 View commit details
    Browse the repository at this point in the history

Commits on Aug 31, 2023

  1. feat!: use readers only unless writers are necessary 

    When writers are necessary, they are attempted to be opened lazily, and cached. H5 backend has slightly different behavior.
    @cmhulbert
    cmhulbert committed Aug 31, 2023
    Configuration menu
    Copy the full SHA
    4b692d2 View commit details
    Browse the repository at this point in the history

  2. fix: test and opening on windows

    @cmhulbert
    cmhulbert committed Aug 31, 2023
    Configuration menu
    Copy the full SHA
    bc0da63 View commit details
    Browse the repository at this point in the history

Commits on Sep 1, 2023

  1. fix: don't use platform paths for groups 

    On windows, `\` is interpreted as an escape character when normalizing the group path, and it is removed.
    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    606731c View commit details
    Browse the repository at this point in the history

  2. Merge pull request saalfeldlab#504 from cmhulbert/feat/smoothAction 

    Feat/smooth action
    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    84e364b View commit details
    Browse the repository at this point in the history

  3. chore: bump n5 dependencies

    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    d5c6360 View commit details
    Browse the repository at this point in the history

  4. chore: debug log for opening reader/writer

    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    14575dc View commit details
    Browse the repository at this point in the history

  5. fix: mask RAI not being extended

    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    901f1f7 View commit details
    Browse the repository at this point in the history

  6. fix: handle interruption of connected components during SAM

    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    39b7c0e View commit details
    Browse the repository at this point in the history

  7. feat!: return button type of commit dialog

    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    fcb4f94 View commit details
    Browse the repository at this point in the history

  8. feat: support skip commit prompt when closing project, without closin… 

    …g paintera
    @cmhulbert
    cmhulbert committed Sep 1, 2023
    Configuration menu
    Copy the full SHA
    13e111a View commit details
    Browse the repository at this point in the history

Commits on Sep 11, 2023

  1. chore: cleanup unused

    @cmhulbert
    cmhulbert committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    a76e384 View commit details
    Browse the repository at this point in the history

  2. fix: don't change state text while updating UI text

    @cmhulbert
    cmhulbert committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    b809081 View commit details
    Browse the repository at this point in the history

  3. fix: properly set max

    @cmhulbert
    cmhulbert committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    4e77781 View commit details
    Browse the repository at this point in the history

  4. fix: don't animate backwards

    @cmhulbert
    cmhulbert committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    a8dc2fa View commit details
    Browse the repository at this point in the history

  5. fix: don't paint if renderer is null

    @cmhulbert
    cmhulbert committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    0d4b084 View commit details
    Browse the repository at this point in the history

  6. perf: label-multiset performance updates and bug fix bump

    @cmhulbert
    cmhulbert committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    ba64380 View commit details
    Browse the repository at this point in the history

  7. fix: don't synchronize now that LabelMultisetType.copy() is thread safe

    @cmhulbert
    cmhulbert committed Sep 11, 2023
    Configuration menu
    Copy the full SHA
    9c6fa0e View commit details
    Browse the repository at this point in the history

Commits on Sep 12, 2023

  1. perf: limit threads for rendering 

    should be a temporary fix, the real fix should use the provided
executorService, that is ultimately passed in from ViewerOptions to
PainteraBaseView
    @cmhulbert
    cmhulbert committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    25cec36 View commit details
    Browse the repository at this point in the history

  2. perf: store value of properties for quicker access

    @cmhulbert
    cmhulbert committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    89a1adc View commit details
    Browse the repository at this point in the history

  3. refactor!: use TaskExecutor instead of numThreads and ExecutorService

    @cmhulbert
    cmhulbert committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    ed2ca94 View commit details
    Browse the repository at this point in the history

  4. perf: dont use default executor, and only run single threaded

    @cmhulbert
    cmhulbert committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    7f3f45d View commit details
    Browse the repository at this point in the history

  5. fix: limit render threads

    @cmhulbert
    cmhulbert committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    a2a6044 View commit details
    Browse the repository at this point in the history

  6. Revert "fix: limit render threads" 

    This reverts commit a2a6044.
    @cmhulbert
    cmhulbert committed Sep 12, 2023
    Configuration menu
    Copy the full SHA
    130bca8 View commit details
    Browse the repository at this point in the history

Commits on Sep 13, 2023

  1. feat: name render threads

    @cmhulbert
    cmhulbert committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    b9622c2 View commit details
    Browse the repository at this point in the history

  2. refactor!: change double buffer logic

    @cmhulbert
    cmhulbert committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    d44b790 View commit details
    Browse the repository at this point in the history

  3. perf: clearMask and clearUntouchedTargetPixels multithread and use re… 

    …nder executor
    @cmhulbert
    cmhulbert committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    3d0f1a2 View commit details
    Browse the repository at this point in the history

  4. fix: accidentally used numBuffers instead of screenScales

    @cmhulbert
    cmhulbert committed Sep 13, 2023
    Configuration menu
    Copy the full SHA
    20f461b View commit details
    Browse the repository at this point in the history

Commits on Sep 18, 2023

  1. fix: copy and update map instead of modification, for thread safety

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    5674594 View commit details
    Browse the repository at this point in the history

  2. fix: multithreading requires thread-safe argbCache access

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    c8798a4 View commit details
    Browse the repository at this point in the history

  3. fix: multithreading requires thread-safe visitedBlocks access

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    1f54a5c View commit details
    Browse the repository at this point in the history

  4. perf: don't get all three if unnecessary

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    36dae7a View commit details
    Browse the repository at this point in the history

  5. fix: default size 0,0

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    de72936 View commit details
    Browse the repository at this point in the history

  6. fix: don't trigger change when adding a listener

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    4cfa67a View commit details
    Browse the repository at this point in the history

  7. fix: don't trigger update on construction

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    6d78e7c View commit details
    Browse the repository at this point in the history

  8. perf: don't set to all Opaque in the overlay renderer

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    e60107d View commit details
    Browse the repository at this point in the history

  9. perf: get all fragments and compare, instead of lookup each time

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    faeb475 View commit details
    Browse the repository at this point in the history

  10. perf: predicate against Long instead of type; can reuse result, inste… 

    …ad of multiple `get()` calls
    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    be3c637 View commit details
    Browse the repository at this point in the history

  11. refator: don't use default service, always just use one thread

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    255de7e View commit details
    Browse the repository at this point in the history

  12. refactor: extract blocksForLabel to be used elsewhere

    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    3886c9c View commit details
    Browse the repository at this point in the history

  13. refactor!: double buffer logic 

    fix: double buffer was occasionally getting the wrong buffer
    @cmhulbert
    cmhulbert committed Sep 18, 2023
    Configuration menu
    Copy the full SHA
    cbac7e6 View commit details
    Browse the repository at this point in the history

Commits on Sep 19, 2023

  1. doc: remove incorrect label merge key binding information

    @cmhulbert
    cmhulbert committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    c793e47 View commit details
    Browse the repository at this point in the history

  2. perf: limit max framerate for paint requests

    @cmhulbert
    cmhulbert committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    6d1b2e1 View commit details
    Browse the repository at this point in the history

  3. perf: set priority for refresh and work threads 

    refactor: use own executor service
    @cmhulbert
    cmhulbert committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    03eb093 View commit details
    Browse the repository at this point in the history

  4. fix: mark appropriate threads as daemon

    @cmhulbert
    cmhulbert committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    aa0dd71 View commit details
    Browse the repository at this point in the history

  5. feat: background Black prior to any sources loaded

    @cmhulbert
    cmhulbert committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    f1f75a6 View commit details
    Browse the repository at this point in the history

  6. fix: overlay canvas size 0 before set

    @cmhulbert
    cmhulbert committed Sep 19, 2023
    Configuration menu
    Copy the full SHA
    73dd2bb View commit details
    Browse the repository at this point in the history

Commits on Sep 20, 2023

  1. fix: floodfill not released when done 

    This had the effect of occasionally not triggering an update to the
interpolation segments in shape interpolation
    @cmhulbert
    cmhulbert committed Sep 20, 2023
    Configuration menu
    Copy the full SHA
    da0c0e1 View commit details
    Browse the repository at this point in the history

Commits on Sep 21, 2023

  1. cleanup!: remove unused class

    @cmhulbert
    cmhulbert committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    183e20c View commit details
    Browse the repository at this point in the history

  2. fix: flood fill in shape interpolation

    @cmhulbert
    cmhulbert committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    c9558a7 View commit details
    Browse the repository at this point in the history

  3. tmp: does this help?

    @cmhulbert
    cmhulbert committed Sep 21, 2023
    Configuration menu
    Copy the full SHA
    9aa8df8 View commit details
    Browse the repository at this point in the history