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fix(embedded): Don't create an intermediate manifest
To parse the manifest, we have to write it out so our regular manifest loading code could handle it. This updates the manifest parsing code to handle it. This doesn't mean this will work everywhere in all cases though. For example, ephemeral workspaces parses a manifest from the SourceId and these won't have valid SourceIds. As a consequence, `Cargo.lock` and `CARGO_TARGET_DIR` are changing from being next to the temp manifest to being next to the script. This still isn't the desired behavior but stepping stones.
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