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All lab work-related knowledge we gather (not code)

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Knowledge Base

All lab work-related knowledge we gather (not code)

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  • CellAssign: automated annotation based on provided markers. Requires to install tensorflow on R. Didn't manage to install it on the server (@vpetukhov).
  • Garnett: automated annotation based on provided markers. Tried on epilepsy data, quality was too low to use (@vpetukhov). Maybe could work on simpler datasets.

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  • scfind: tool from Hemberg lab, which allow to look for markers in the published atlases. Should simplify annotation.

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All lab work-related knowledge we gather (not code)

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