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rraadd88 committed Feb 12, 2024
1 parent da171e2 commit c590cc6
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Showing 3 changed files with 44 additions and 44 deletions.
2 changes: 1 addition & 1 deletion .github/workflows/release.yml
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ jobs:
- name: Set up Python
uses: actions/setup-python@v2
with:
python-version: 3.7
python-version: 3.9
- name: Install pypa/build
run: >-
python -m
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6 changes: 3 additions & 3 deletions setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -32,7 +32,7 @@
requirements = {
"base": [
# 'roux'
"roux @ git+https://github.com/rraadd88/roux.git@master",
"roux==0.1.1",
## requirements from roux
# 'seaborn',
# 'numpy>=1.17.3',
Expand Down Expand Up @@ -62,7 +62,7 @@
"gui": [
"mercury==2.3.7",
"dna_features_viewer==3.1.3",
"chrov @ git+https://github.com/rraadd88/chrov.git@main",
"chrov==0.0.2",
],
## development and maintenance
"dev": [
Expand Down Expand Up @@ -133,7 +133,7 @@ def run(self):
include_package_data=True,
entry_points={
"console_scripts": [
"roux = beditor.run:parser.dispatch",
"beditor = beditor.run:parser.dispatch",
],
},
cmdclass={"install": InstallCommand},
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80 changes: 40 additions & 40 deletions tests/test_run.py
Original file line number Diff line number Diff line change
Expand Up @@ -21,47 +21,47 @@ def test_base_positions():
force=True,
)

# def test_base_regions():
# set_wd()
# return cli(
# config_path='inputs/mutations/base/regions.yml',
# verbose='INFO',#'DEBUG',
# skip=['Visualize'], # skipped because interactive
# force=True,
# )
def test_base_regions():
set_wd()
return cli(
config_path='inputs/mutations/base/regions.yml',
verbose='INFO',#'DEBUG',
skip=['Visualize'], # skipped because interactive
force=True,
)

# def test_base_regions():
# set_wd()
# return cli(
# config_path='inputs/mutations/base/points.yml',
# verbose='INFO',#'DEBUG',
# skip=['Visualize'], # skipped because interactive
# force=True,
# )
def test_base_regions():
set_wd()
return cli(
config_path='inputs/mutations/base/points.yml',
verbose='INFO',#'DEBUG',
skip=['Visualize'], # skipped because interactive
force=True,
)

# def test_protein_positions():
# set_wd()
# return cli(
# config_path='inputs/mutations/protein/positions.yml',
# verbose='INFO',#'DEBUG',
# skip=['Visualize'], # skipped because interactive
# force=True,
# )
def test_protein_positions():
set_wd()
return cli(
config_path='inputs/mutations/protein/positions.yml',
verbose='INFO',#'DEBUG',
skip=['Visualize'], # skipped because interactive
force=True,
)

# def test_protein_regions():
# set_wd()
# return cli(
# config_path='inputs/mutations/protein/regions.yml',
# verbose='INFO',#'DEBUG',
# skip=['Visualize'], # skipped because interactive
# force=True,
# )
def test_protein_regions():
set_wd()
return cli(
config_path='inputs/mutations/protein/regions.yml',
verbose='INFO',#'DEBUG',
skip=['Visualize'], # skipped because interactive
force=True,
)

# def test_protein_regions():
# set_wd()
# return cli(
# config_path='inputs/mutations/protein/points.yml',
# verbose='INFO',#'DEBUG',
# skip=['Visualize'], # skipped because interactive
# force=True,
# )
def test_protein_regions():
set_wd()
return cli(
config_path='inputs/mutations/protein/points.yml',
verbose='INFO',#'DEBUG',
skip=['Visualize'], # skipped because interactive
force=True,
)

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