Adjust GH Actions templates to general use_*_yml() logic and u… (#246)

* Adjust GH Actions templates to general `use_*_yml()` logic (#246) * Packages on R-devel macOS are now installed in parallel again. * R 4.0 macOS toolchain adjustments
ropensci · Apr 12, 2020 · 0792854 · 0792854
1 parent 4eca849
commit 0792854
Show file tree

Hide file tree

Showing 17 changed files with 481 additions and 82 deletions.
diff --git a/.Rbuildignore b/.Rbuildignore
@@ -18,3 +18,4 @@
 ^man-roxygen$
 ^\.github$
 ^clang-.*
+^gfortran.*
diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -20,7 +20,7 @@ jobs:
         config:
           # comment out lines if you do not want to build on certain platforms
           - { os: windows-latest, r: "release" }
-          - { os: macOS-latest, r: "release" }
+          - { os: macOS-latest, r: "release", pkgdown: "true" }
           - { os: macOS-latest, r: "devel" }
           - { os: ubuntu-latest, r: "release" }
 
@@ -38,6 +38,11 @@ jobs:
       TIC_DEPLOY_KEY: ${{ secrets.TIC_DEPLOY_KEY }}
       # prevent rgl issues because no X11 display is available
       RGL_USE_NULL: true
+      # if you use bookdown or blogdown, replace "PKGDOWN" by the respective
+      # capitalized term. This also might need to be done in tic.R
+      BUILD_PKGDOWN: ${{ matrix.config.pkgdown }} 
+      # macOS >= 10.15.4 linking
+      SDKROOT: /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk
 
     steps:
       - uses: actions/checkout@v2
@@ -91,7 +96,7 @@ jobs:
         if: runner.os == 'Linux'
         run: |
           sudo apt install ccache libcurl4-openssl-dev
-          mkdir -p ~/.R && echo -e 'CXX_STD = CXX14\n\nCC=ccache gcc -std=gnu99\nCXX=ccache g++\nCXX11=ccache g++ -std=gnu99\nCXX14=ccache g++ -std=gnu99\nC11=ccache g++\nC14=ccache g++\nFC=ccache gfortran\nF77=ccache gfortran' > $HOME/.R/Makevars
+          mkdir -p ~/.R && echo -e 'CC=ccache gcc -std=gnu99\nCXX=ccache g++\nFC=ccache gfortran\nF77=ccache gfortran' > $HOME/.R/Makevars
 
       # install ccache and write config file
       # mirror the setup described in https://github.com/rmacoslib/r-macos-rtools
@@ -101,19 +106,27 @@ jobs:
           brew install ccache
           wget https://cran.r-project.org/bin/macosx/tools/clang-7.0.0.pkg
           sudo installer -package clang-7.0.0.pkg -target /
-          mkdir -p ~/.R && echo -e 'CXX_STD = CXX14\n\nCC=ccache /usr/local/clang7/bin/clang\nCC11=ccache /usr/local/clang7/bin/clang\nCC14=ccache /usr/local/clang7/bin/clang\nCXX=ccache /usr/local/clang7/bin/clang++\nCXX11=ccache /usr/local/clang7/bin/clang++\nCXX14=ccache /usr/local/clang7/bin/clang++\nC11=ccache /usr/local/clang7/bin/clang++\nC14=ccache /usr/local/clang7/bin/clang++\nF77=ccache gfortran/nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' > $HOME/.R/Makevars
-          R CMD javareconf
+          mkdir -p ~/.R && echo -e 'CC=ccache /usr/local/clang7/bin/clang\nCXX=ccache /usr/local/clang7/bin/clang++\nF77=ccache gfortran/nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCPPFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' > $HOME/.R/Makevars
 
       # install ccache and write config file
       # mirror the setup described in https://github.com/rmacoslib/r-macos-rtools
       - name: "[macOS-devel] ccache"
         if: runner.os == 'macOS' && matrix.config.r == 'devel'
         run: |
           brew install ccache
-          wget https://cran.r-project.org/bin/macosx/tools/clang-8.0.0.pkg
-          sudo installer -package clang-8.0.0.pkg -target /
-          mkdir -p ~/.R && echo -e 'CXX_STD = CXX14\n\nCC=ccache /usr/local/clang8/bin/clang\nCC11=ccache /usr/local/clang8/bin/clang\nCC14=ccache /usr/local/clang8/bin/clang\nCXX=ccache /usr/local/clang8/bin/clang++\nCXX11=ccache /usr/local/clang8/bin/clang++\nCXX14=ccache /usr/local/clang8/bin/clang++\nC11=ccache /usr/local/clang8/bin/clang++\nC14=ccache /usr/local/clang8/bin/clang++\nF88=ccache gfortran/nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk\nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk' > $HOME/.R/Makevars
-          R CMD javareconf
+          # install SDK 10.13 (High Sierra, used by CRAN)
+          wget -nv https://github.com/phracker/MacOSX-SDKs/releases/download/10.15/MacOSX10.13.sdk.tar.xz
+          tar fxz MacOSX10.13.sdk.tar.xz
+          sudo mv MacOSX10.13.sdk /Library/Developer/CommandLineTools/SDKs/
+          rm -rf MacOSX10.13*
+          # install gfortran 8.2 (used by CRAN)
+          wget -nv https://github.com/fxcoudert/gfortran-for-macOS/releases/download/8.2/gfortran-8.2-Mojave.dmg
+          sudo hdiutil attach gfortran*.dmg
+          sudo installer -package /Volumes/gfortran*/gfortran*/gfortran*.pkg -target /
+          sudo hdiutil detach /Volumes/gfortran-8.2-Mojave
+          rm gfortran-8*
+          # set compiler flags
+          mkdir -p ~/.R && echo -e 'CC=ccache clang\nCPP=ccache clang\nCXX=ccache clang++\nCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCCFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCXXFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nCPPFLAGS=-isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX10.13.sdk\nF77=ccache /usr/local/gfortran/bin/gfortran\nFC=ccache /usr/local/gfortran/bin/gfortran' > $HOME/.R/Makevars
 
       # for some strange Windows reason this step and the next one need to be decoupled
       - name: "[Stage] Prepare"
@@ -129,7 +142,7 @@ jobs:
       - name: "[Stage] Prepare & Install (macOS-devel)"
         if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'devel'
         run: |
-          echo -e 'options(pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile
+          echo -e 'options(Ncpus = 4, pkgType = "source", repos = structure(c(CRAN = "https://cloud.r-project.org/")))' > $HOME/.Rprofile
           Rscript -e "remotes::install_github('ropensci/tic')" -e "print(tic::dsl_load())" -e "tic::prepare_all_stages()" -e "tic::before_install()" -e "tic::install()"
 
       - name: "[Stage] Script"
@@ -146,15 +159,12 @@ jobs:
           name: ${{ runner.os }}-r${{ matrix.config.r }}-results
           path: check
       - name: "[Stage] Before Deploy"
-        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
         run: |
           Rscript -e "tic::before_deploy()"
 
       - name: "[Stage] Deploy"
-        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
         run: Rscript -e "tic::deploy()"
 
       - name: "[Stage] After Deploy"
-        if: matrix.config.os == 'macOS-latest' && matrix.config.r == 'release'
         run: Rscript -e "tic::after_deploy()"