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last (hopefully) cleaning of tests to replace inheritance checks and …
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@RWParsons
RWParsons committed Aug 19, 2024
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192 changes: 99 additions & 93 deletions tests/testthat/_snaps/cosinor.md
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Original file line number Diff line number Diff line change
Expand Up @@ -35,103 +35,109 @@

# model output is class cglmm


Conditional Model

Raw formula:
vit_d ~ X + X:main_rrr1 + X:main_sss1

Raw Coefficients:
Estimate
(Intercept) 29.7
X1 1.9
X0:main_rrr1 0.8
X1:main_rrr1 6.5
X0:main_sss1 6.1
X1:main_sss1 4.8

Transformed Coefficients:
Code
print(object, digits = 2)
Output
Conditional Model
Raw formula:
vit_d ~ X + X:main_rrr1 + X:main_sss1
Raw Coefficients:
Estimate
(Intercept) 29.7
X1 1.9
X0:main_rrr1 0.8
X1:main_rrr1 6.5
X0:main_sss1 6.1
X1:main_sss1 4.8
Transformed Coefficients:
Estimate
(Intercept) 29.7
[X=1] 1.9
[X=0]:amp 6.2
[X=1]:amp 8.1
[X=0]:acr 1.4
[X=1]:acr 0.6
***********************
Dispersion Model
Raw Formula:
~X:disp_rrr1 + X:disp_sss1 - 1
Raw Coefficients:
Estimate
X0:disp_rrr1 0.3
X1:disp_rrr1 -0.1
X0:disp_sss1 0.0
X1:disp_sss1 0.0
Transformed Coefficients:
Estimate
(Intercept) 29.7
[X=1] 1.9
[X=0]:amp 6.2
[X=1]:amp 8.1
[X=0]:acr 1.4
[X=1]:acr 0.6

***********************

Dispersion Model

Raw Formula:
~X:disp_rrr1 + X:disp_sss1 - 1

Raw Coefficients:
[X=0]:amp 0.3
[X=1]:amp 0.1
[X=0]:acr 0.0
[X=1]:acr -2.6
***********************
Zero-Inflation Model
Raw Formula:
~X:zi_rrr1 + X:zi_sss1 - 1
Raw Coefficients:
Estimate
X0:disp_rrr1 0.3
X1:disp_rrr1 -0.1
X0:disp_sss1 0.0
X1:disp_sss1 0.0

Transformed Coefficients:
Estimate
[X=0]:amp 0.3
[X=1]:amp 0.1
[X=0]:acr 0.0
[X=1]:acr -2.6

***********************

Zero-Inflation Model

Raw Formula:
~X:zi_rrr1 + X:zi_sss1 - 1

Raw Coefficients:
Estimate
X0:zi_rrr1 -0.2
X1:zi_rrr1 0.1
X0:zi_sss1 0.1
X1:zi_sss1 0.2

Transformed Coefficients:
Estimate
[X=0]:amp 0.2
[X=1]:amp 0.2
[X=0]:acr 2.6
[X=1]:acr 1.3
X0:zi_rrr1 -0.2
X1:zi_rrr1 0.1
X0:zi_sss1 0.1
X1:zi_sss1 0.2
Transformed Coefficients:
Estimate
[X=0]:amp 0.2
[X=1]:amp 0.2
[X=0]:acr 2.6
[X=1]:acr 1.3

---


Conditional Model

Raw formula:
Y ~ group + group:main_rrr1 + group:main_sss1 + group:main_rrr2 + group:main_sss2 + (0 + main_rrr2 + main_sss2 | group)

Raw Coefficients:
Code
print(object, digits = 2)
Output
Conditional Model
Raw formula:
Y ~ group + group:main_rrr1 + group:main_sss1 + group:main_rrr2 + group:main_sss2 + (0 + main_rrr2 + main_sss2 | group)
Raw Coefficients:
Estimate
(Intercept) 5.0
group1 -3.0
group0:main_rrr1 0.1
group1:main_rrr1 0.0
group0:main_sss1 0.9
group1:main_sss1 1.0
group0:main_rrr2 1.1
group1:main_rrr2 1.1
group0:main_sss2 1.7
group1:main_sss2 1.7
Transformed Coefficients:
Estimate
(Intercept) 5.0
group1 -3.0
group0:main_rrr1 0.1
group1:main_rrr1 0.0
group0:main_sss1 0.9
group1:main_sss1 1.0
group0:main_rrr2 1.1
group1:main_rrr2 1.1
group0:main_sss2 1.7
group1:main_sss2 1.7

Transformed Coefficients:
Estimate
(Intercept) 5.0
[group=1] -3.0
[group=0]:amp1 0.9
[group=1]:amp1 1.0
[group=0]:amp2 2.0
[group=1]:amp2 2.0
[group=0]:acr1 1.5
[group=1]:acr1 1.6
[group=0]:acr2 1.0
[group=1]:acr2 1.0
(Intercept) 5.0
[group=1] -3.0
[group=0]:amp1 0.9
[group=1]:amp1 1.0
[group=0]:amp2 2.0
[group=1]:amp2 2.0
[group=0]:acr1 1.5
[group=1]:acr1 1.6
[group=0]:acr2 1.0
[group=1]:acr2 1.0

7 changes: 4 additions & 3 deletions tests/testthat/test-cosinor.R
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Original file line number Diff line number Diff line change
Expand Up @@ -164,7 +164,7 @@ test_that("model output is class cglmm", {
vit_d ~ X + amp_acro(time, group = "X", period = 12),
data = vitamind
)
expect_true(inherits(object, "cglmm"))
expect_s3_class(object, "cglmm")

object <- cglmm(
vit_d ~ X + amp_acro(time, group = "X", period = 12),
Expand All @@ -173,7 +173,8 @@ test_that("model output is class cglmm", {
ziformula = ~ 0 + amp_acro(time, group = "X", period = 12)
)
expect_no_error(object)
expect_snapshot_output(print(object, digits = 2))
expect_snapshot(print(object, digits = 2))
expect_s3_class(object, "cglmm")
expect_true(inherits(object, "cglmm"))

#' @srrstats {RE7.2}
Expand Down Expand Up @@ -228,7 +229,7 @@ test_that("model output is class cglmm", {
Y ~ group + group:main_rrr1 + group:main_sss1 + group:main_rrr2 +
group:main_sss2 + (0 + main_rrr2 + main_sss2 | group)
)
expect_snapshot_output(print(object, digits = 2))
expect_snapshot(print(object, digits = 2))
})


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