update test-coverage GHA

ropensci · Nov 4, 2024 · ee1c3a0 · ee1c3a0
1 parent f03d9bd
commit ee1c3a0
Show file tree

Hide file tree

Showing 3 changed files with 20 additions and 11 deletions.
diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
@@ -6,47 +6,56 @@ on:
   pull_request:
     branches: [main, dev]
 
-name: test-coverage
+name: test-coverage.yaml
+
+permissions: read-all
 
 jobs:
   test-coverage:
     runs-on: ubuntu-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      CODECOV_TOKEN: ${{ secrets.CODECOV_TKN }}
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - uses: r-lib/actions/setup-r@v2
         with:
           use-public-rspm: true
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::covr
+          extra-packages: any::covr, any::xml2
           needs: coverage
 
       - name: Test coverage
         run: |
-          covr::codecov(
+          cov <- covr::package_coverage(
             quiet = FALSE,
             clean = FALSE,
-            install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package"),
-            token = Sys.getenv("CODECOV_TKN")
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        with:
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
       - name: Show testthat output
         if: always()
         run: |
           ## --------------------------------------------------------------------
-          find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true
+          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
         shell: bash
 
       - name: Upload test results
         if: failure()
-        uses: actions/upload-artifact@v3
+        uses: actions/upload-artifact@v4
         with:
           name: coverage-test-failures
           path: ${{ runner.temp }}/package
diff --git a/README.Rmd b/README.Rmd
@@ -28,7 +28,7 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 [![cranlogs](https://www.r-pkg.org/badges/version/GLMMcosinor)](https://CRAN.R-project.org/package=GLMMcosinor)
 [![R-CMD-check](https://github.com/ropensci/GLMMcosinor/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/GLMMcosinor/actions/workflows/R-CMD-check.yaml)
-[![Codecov test coverage](https://codecov.io/gh/ropensci/GLMMcosinor/branch/main/graph/badge.svg)](https://app.codecov.io/gh/ropensci/GLMMcosinor?branch=main)
+[![Codecov test coverage](https://codecov.io/gh/ropensci/GLMMcosinor/graph/badge.svg)](https://app.codecov.io/gh/ropensci/GLMMcosinor)
 [![License: GPL v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
 [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![Status at rOpenSci Software Peer Review](https://badges.ropensci.org/603_status.svg)](https://github.com/ropensci/software-review/issues/603)

diff --git a/README.md b/README.md
@@ -8,7 +8,7 @@
 [![cranlogs](https://www.r-pkg.org/badges/version/GLMMcosinor)](https://CRAN.R-project.org/package=GLMMcosinor)
 [![R-CMD-check](https://github.com/ropensci/GLMMcosinor/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/ropensci/GLMMcosinor/actions/workflows/R-CMD-check.yaml)
 [![Codecov test
-coverage](https://codecov.io/gh/ropensci/GLMMcosinor/branch/main/graph/badge.svg)](https://app.codecov.io/gh/ropensci/GLMMcosinor?branch=main)
+coverage](https://codecov.io/gh/ropensci/GLMMcosinor/graph/badge.svg)](https://app.codecov.io/gh/ropensci/GLMMcosinor)
 [![License: GPL
 v3](https://img.shields.io/badge/License-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0)
 [![Project Status: Active – The project has reached a stable, usable