🚧

install_r.sh

@@ -33,18 +33,19 @@ apt-get install --yes --no-install-recommends python3-{dbus,gi,apt} \
 ## Then install bspm (as root) and enable it, and enable a speed optimization
 Rscript -e 'install.packages("bspm")'
 R_HOME=$(R RHOME)
-# must go first
-echo "options(bspm.sudo = TRUE)" >> ${R_HOME}/etc/Rprofile.site
-echo "options(bspm.version.check=FALSE)" >> ${R_HOME}/etc/Rprofile.site
+
+# must go first.  Only configure for ROOT user
+echo "options(bspm.sudo = TRUE)" >> ${HOME}/.Rprofile
+echo "options(bspm.version.check=FALSE)" >> ${HOME}/.Rprofile
 echo "suppressMessages(bspm::enable())" >> ${HOME}/.Rprofile
 
 chown root:staff ${R_HOME}/site-library
 chmod g+ws ${R_HOME}/site-library
 
 ln -s /usr/lib/R/site-library/littler/examples/install2.r /usr/local/bin/install2.r
 
-## add user to sudoers
-usermod -a -G staff ${NB_USER}
-echo "${NB_USER} ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers
+## add user to sudoers -- not jupyterhub compatible
+# usermod -a -G staff ${NB_USER}
+# echo "${NB_USER} ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers