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Bump deps #16

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merged 1 commit into from
May 22, 2023
Merged

Bump deps #16

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4 changes: 1 addition & 3 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -120,9 +120,7 @@ jobs:
- name: Generate requirements.txt
if: steps.cache-dataset.outputs.cache-hit != 'true'
run: |
echo 'cooler==0.8.11' > requirements.txt
echo 'matplotlib<3.6' >> requirements.txt
echo 'numpy<1.24' >> requirements.txt
echo 'cooler==0.9.1' > requirements.txt
- name: Setup Python
if: steps.cache-dataset.outputs.cache-hit != 'true'
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5 changes: 3 additions & 2 deletions env.yml
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Expand Up @@ -10,11 +10,12 @@ channels:

dependencies:
- python>=3.8
- bedtools=2.30.*
- bioframe=0.3.*
- bedtools=2.31.*
- bioframe=0.4.1
- cooler=0.9.*
- hicexplorer=3.7.2
- networkx=3.*
- pandas<2
- procps-ng
- seaborn=0.12.*
- statsmodels=0.13.*
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