Merge pull request #16 from robomics/bump-deps

Bump deps
robomics · May 22, 2023 · 1876000 · 1876000
2 parents 07bbfa8 + 0291770
commit 1876000
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Showing 2 changed files with 4 additions and 5 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -120,9 +120,7 @@ jobs:
     - name: Generate requirements.txt
       if: steps.cache-dataset.outputs.cache-hit != 'true'
       run: |
-        echo 'cooler==0.8.11' > requirements.txt
-        echo 'matplotlib<3.6' >> requirements.txt
-        echo 'numpy<1.24' >> requirements.txt
+        echo 'cooler==0.9.1' > requirements.txt
 
     - name: Setup Python
       if: steps.cache-dataset.outputs.cache-hit != 'true'

diff --git a/env.yml b/env.yml
@@ -10,11 +10,12 @@ channels:
 
 dependencies:
   - python>=3.8
-  - bedtools=2.30.*
-  - bioframe=0.3.*
+  - bedtools=2.31.*
+  - bioframe=0.4.1
   - cooler=0.9.*
   - hicexplorer=3.7.2
   - networkx=3.*
+  - pandas<2
   - procps-ng
   - seaborn=0.12.*
   - statsmodels=0.13.*