update news and cran comments

NEWS.md

@@ -2,7 +2,7 @@
 
 * `bed_closest()` now reports all x intervals, even when there are no closest y intervals (e.g. when there is no matching chromosome in y intervals). These intervals are returned populated with `NA` for `.overlap`, `.dist` and y interval locations. 
 
-* Reimplemented `bed_closest()` to use binary search rather than interval tree. The closest y interval can be missed with previous search strategy in high depth interval trees. 
+* Reimplemented `bed_closest()` to use binary search rather than an interval tree search. The closest y interval can be missed with the previous search strategy in high depth interval trees. 
 
 * Fix off by one error when using `max_dist` argument in `bed_cluster()` (#401).
 

cran-comments.md

@@ -1,58 +1,50 @@
 ## New patch version
 
-* This is a new patch version that fixes a minor bug in the bed_coverage() function, and removes C++11 specifications from the `SystemRequirements` field and Makevar files.   
+* This is a new patch version, with a re-implementation of the C++ internals for `bed_closest()`, and a minor bug fix in `bed_cluster()`.
 
 ## Test environment
 
-* win-builder (R-devel)
-* local OS X install, (4.2.2) 
-* Windows (on Github Actions), 4.2.2 (2022-10-31 ucrt)
-* macOS (on Github Actions), R 4.2.2
-* ubuntu 22.04.1 (on Github Actions), (devel and R 4.2.2)
+* win-builder, R devel
+* macOS (local install), R 4.3.0
+* Windows (on Github Actions), R 4.3.0
+* macOS (on Github Actions),  R 4.3.0
+* ubuntu 22.04.1 (on Github Actions), R devel and 4.3.0
 
 ## R CMD check results
 
-* on win-builder (devel)
+* on Windows (win-builder, devel)
 
   Status: 1 NOTE
-  0 errors | 0 warnings | 1 note
-
-  * checking CRAN incoming feasibility ... [18s] NOTE
+  * checking CRAN incoming feasibility ... NOTE
   Maintainer: 'Kent Riemondy <kent.riemondy@cuanschutz.edu>'
 
-  Version contains large components (0.6.6.9000)
-
-* on windows github actions (R 4.2.2)
+  Version contains large components (0.6.7.9000)
 
-  0 errors | 0 warnings | 0 notes
+* on Windows (4.3.0)
 
-* on OS X (R 4.2.2 and devel)
+  Status: OK
+  0 errors | 0 warnings | 0 notes
+
+* on OS X (R 4.3.0)
 
   Status: OK
   0 errors | 0 warnings | 0 notes
 
 * on ubuntu (devel)
 
   Status: 1 NOTE
-
   * checking installed package size ... NOTE
-  installed size is 14.2Mb
+  installed size is 14.5Mb
   sub-directories of 1Mb or more:
-    libs  13.0Mb
-
-  - This package uses Rcpp, which creates a large shared library on linux.
-
-* on ubuntu (R 4.2.2)
+    libs  13.3Mb
+
+* on ubuntu (R 4.3.0)
 
   Status: 1 NOTE
-
   * checking installed package size ... NOTE
-  installed size is 14.2Mb
+  installed size is 14.5Mb
   sub-directories of 1Mb or more:
-    libs  13.0Mb
-
-  - This package uses Rcpp, which creates a large shared library on linux.
-
+    libs  13.3Mb
 
 ## Reverse dependencies