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A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans

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rnabioco/scRNA-seq-Cell-Ref-Matrix

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scRNA-Reference-Matrix

Project to create a large reference matrix from all scRNA-seq datasets with metadata on NCBI GEO. Utilizes PCA, clustering, and UMAP/tSNE

GSE113049: Single Cell RNA Sequencing Identifies TGFβ as a Key Regenerative Cue following LPS-induced Lung Injury, Mus musculus

GSE124952: Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction, Mus musculus

GSE143435: Single-cell transcriptomic atlas of FACS-sorted mouse muscle tissue cells, Mus musculus

GSE129933: Chronic Liver Disease in Humans Causes Expansion and Differentiation of Liver Lymphatic Endothelial Cells, Homo sapiens

GSE137710: Transcriptional basis of mouse and human dendritic cell heterogeneity revealed by single-cell profiling, Homo sapiens

GSE147405: Context specificity of the EMT transcriptional response, Homo sapiens

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A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans

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