rector-prefixed 0.7 throw PhpStormStubsMap errors

[shaal]

Subject	Details
Rector version	v0.7 (invoke vendor/bin/rector --version)
PHP version	PHP 7.3 (invoke php -v)
Full Command	vendor/bin/rector process web/modules/contrib/config_filter --set dead-code --dry-run
Demo link
rector.yaml	(see below)

imports:
  - { resource: "vendor/palantirnet/drupal-rector/config/drupal-8/drupal-8-all-deprecations.yml" }
  # includes:
  # - { resource: "vendor/palantirnet/drupal-rector/config/drupal-8/drupal-8.5-deprecations.yml" }
  # - { resource: "vendor/palantirnet/drupal-rector/config/drupal-8/drupal-8.6-deprecations.yml" }
  # - { resource: "vendor/palantirnet/drupal-rector/config/drupal-8/drupal-8.7-deprecations.yml" }

parameters:
  autoload_paths:
    - 'web/core'
    - 'web/core/modules'
    - 'web/modules'
    - 'web/profiles'

  file_extensions:
    - module
    - theme
    - install
    - profile
    - inc
    - engine

services: ~

Current Behaviour

Rector 0.6.13 is working as expected.
Steps to replicate:

• git clone git@github.com:palantirnet/drupal8-rector-sandbox.git
• cd drupal8-rector-sandbox/
• git checkout rector-0.7
• composer install
• vendor/bin/rector process web/modules/contrib/config_filter --set dead-code --dry-run

Minimal PHP Code Causing Issue

<?php 

// put file content here

Expected Behaviour

[TomasVotruba]

Try removing vendor, composer.lock and reinstall. Composer migh be buggy in resolving phar files

[shaal]

I tried, I am getting same errors :(

[shaal]

I am closing this issue as a duplicate of #2879

There are more details about the problem in the other issue.