Refactoring into 23.08 (#24)

This branch is a collection of all the refactoring improvements.  

closes #13 
closes #14 
closes #17 
closes #18 
closes rapidsai/cugraph-ops#492

Authors:
  - Brad Rees (https://github.com/BradReesWork)
  - https://github.com/dongxuy04
  - Junhong Liu (https://github.com/hello-11)
  - Tingyu Wang (https://github.com/tingyu66)

Approvers:
  - Tingyu Wang (https://github.com/tingyu66)
  - https://github.com/dongxuy04
  - AJ Schmidt (https://github.com/ajschmidt8)

URL: #24

.flake8

@@ -0,0 +1,25 @@
+# Copyright (c) 2023, NVIDIA CORPORATION.
+
+[flake8]
+filename = *.py, *.pyx, *.pxd, *.pxi
+exclude = __init__.py, *.egg, build, docs, .git
+force-check = True
+max-line-length = 120
+ignore =
+    # line break before binary operator
+    W503,
+    # whitespace before :
+    E203
+per-file-ignores =
+    # Rules ignored only in Cython:
+    # E211: whitespace before '(' (used in multi-line imports)
+    # E225: Missing whitespace around operators (breaks cython casting syntax like <int>)
+    # E226: Missing whitespace around arithmetic operators (breaks cython pointer syntax like int*)
+    # E227: Missing whitespace around bitwise or shift operator (Can also break casting syntax)
+    # E275: Missing whitespace after keyword (Doesn't work with Cython except?)
+    # E402: invalid syntax (works for Python, not Cython)
+    # E999: invalid syntax (works for Python, not Cython)
+    # W504: line break after binary operator (breaks lines that end with a pointer)
+    *.pyx: E211, E225, E226, E227, E275, E402, E999, W504
+    *.pxd: E211, E225, E226, E227, E275, E402, E999, W504
+    *.pxi: E211, E225, E226, E227, E275, E402, E999, W504

.github/CODEOWNERS

@@ -0,0 +1,30 @@
+# https://docs.github.com/en/github/creating-cloning-and-archiving-repositories/about-code-owners
+# Order matters - match of highest importance goes last (last match wins)
+
+#doc code owners
+datasets/          @rapidsai/wholegraph-doc-codeowners
+notebooks/         @rapidsai/wholegraph-doc-codeowners
+docs/              @rapidsai/wholegraph-doc-codeowners
+**/*.txt           @rapidsai/wholegraph-doc-codeowners
+**/*.md            @rapidsai/wholegraph-doc-codeowners
+**/*.rst           @rapidsai/wholegraph-doc-codeowners
+**/*.ipynb         @rapidsai/wholegraph-doc-codeowners
+**/*.pdf           @rapidsai/wholegraph-doc-codeowners
+**/*.png           @rapidsai/wholegraph-doc-codeowners
+
+#cpp code owners
+cpp/               @rapidsai/wholegraph-cpp-codeowners
+
+#python code owners
+python/            @rapidsai/wholegraph-python-codeowners
+
+#cmake code owners
+**/CMakeLists.txt  @rapidsai/wholegraph-cmake-codeowners
+**/cmake/          @rapidsai/wholegraph-cmake-codeowners
+
+#build/ops code owners
+.github/           @rapidsai/ops-codeowners
+ci/                @rapidsai/ops-codeowners
+conda/             @rapidsai/ops-codeowners
+**/Dockerfile      @rapidsai/ops-codeowners
+**/.dockerignore   @rapidsai/ops-codeowners

.github/labeler.yml

@@ -0,0 +1,37 @@
+# https://github.com/actions/labeler#common-examples
+# Adapted from https://github.com/rapidsai/wholegraph/blob/main/.github/CODEOWNERS
+# Labels culled from https://github.com/rapidsai/cugraph/labels
+
+python:
+  - 'python/**'
+  - 'notebooks/**'
+
+benchmarks:
+  - 'benchmarks/**'
+
+doc:
+  - 'docs/**'
+  - '**/*.md'
+  - 'datasets/**'
+  - 'notebooks/**'
+  - '**/*.txt'
+  - '**/*.rst'
+  - '**/*.ipynb'
+  - '**/*.pdf'
+  - '**/*.png'
+
+datasets:
+  - 'datasets/**'
+
+WholeGraph:
+  - 'cpp/**'
+
+CMake:
+  - '**/CMakeLists.txt'
+  - '**/cmake/**'
+
+ci:
+   - 'ci/**'
+
+conda:
+  - 'conda/**'

.github/workflows/add-to-project.yml

@@ -0,0 +1,19 @@
+name: Add new issue/PR to project
+
+on:
+  issues:
+    types:
+      - opened
+  pull_request_target:
+    types:
+      - opened
+
+jobs:
+  add-to-project:
+    name: Add issue or PR to project
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/add-to-project@v0.3.0
+        with:
+          project-url: https://github.com/orgs/rapidsai/projects/47
+          github-token: ${{ secrets.ADD_TO_PROJECT_GITHUB_TOKEN }}

.github/workflows/build.yaml

@@ -0,0 +1,85 @@
+name: build
+
+on:
+  push:
+    branches:
+      - "branch-*"
+    tags:
+      - v[0-9][0-9].[0-9][0-9].[0-9][0-9]
+  workflow_dispatch:
+    inputs:
+      branch:
+        required: true
+        type: string
+      date:
+        required: true
+        type: string
+      sha:
+        required: true
+        type: string
+      build_type:
+        type: string
+        default: nightly
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  cpp-build:
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-cpp-build.yaml@branch-23.08
+    with:
+      build_type: ${{ inputs.build_type || 'branch' }}
+      branch: ${{ inputs.branch }}
+      date: ${{ inputs.date }}
+      sha: ${{ inputs.sha }}
+      build_script: ci/build_cpp.sh
+  python-build:
+    needs: [cpp-build]
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-python-build.yaml@branch-23.08
+    with:
+      build_type: ${{ inputs.build_type || 'branch' }}
+      branch: ${{ inputs.branch }}
+      date: ${{ inputs.date }}
+      sha: ${{ inputs.sha }}
+      build_script: ci/build_python.sh
+  docs-build:
+    if: ${{ startsWith(github.ref, 'refs/heads/branch-') }}
+    needs: [python-build]
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/custom-job.yaml@branch-23.08
+    with:
+      build_type: branch
+      node_type: "gpu-v100-latest-1"
+      arch: "amd64"
+      container_image: "rapidsai/ci:latest"
+      run_script: "ci/build_docs.sh"
+  upload-conda:
+    needs: [cpp-build, python-build]
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-upload-packages.yaml@branch-23.08
+    with:
+      build_type: ${{ inputs.build_type || 'branch' }}
+      branch: ${{ inputs.branch }}
+      date: ${{ inputs.date }}
+      sha: ${{ inputs.sha }}
+  wheel-build-pylibwholegraph:
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/wheels-build.yaml@branch-23.08
+    with:
+      build_type: ${{ inputs.build_type || 'branch' }}
+      branch: ${{ inputs.branch }}
+      sha: ${{ inputs.sha }}
+      date: ${{ inputs.date }}
+  wheel-publish-pylibwholegraph:
+    needs: wheel-build-pylibwholegraph
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/wheels-publish.yaml@branch-23.08
+    with:
+      build_type: ${{ inputs.build_type || 'branch' }}
+      branch: ${{ inputs.branch }}
+      sha: ${{ inputs.sha }}
+      date: ${{ inputs.date }}
+      package-name: pylibwholegraph

.github/workflows/pr.yaml

@@ -0,0 +1,78 @@
+name: pr
+
+on:
+  push:
+    branches:
+      - "pull-request/[0-9]+"
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  pr-builder:
+    needs:
+      - checks
+      - conda-cpp-build
+      - conda-cpp-tests
+      - conda-python-build
+      - conda-python-tests
+      - docs-build
+      - wheel-build-pylibwholegraph
+      - wheel-test-pylibwholegraph
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/pr-builder.yaml@branch-23.08
+  checks:
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/checks.yaml@branch-23.08
+    with:
+      enable_check_generated_files: false
+  conda-cpp-build:
+    needs: checks
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-cpp-build.yaml@branch-23.08
+    with:
+      build_type: pull-request
+      node_type: cpu16
+  conda-cpp-tests:
+    needs: conda-cpp-build
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-cpp-tests.yaml@branch-23.08
+    with:
+      build_type: pull-request
+  conda-python-build:
+    needs: conda-cpp-build
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-python-build.yaml@branch-23.08
+    with:
+      build_type: pull-request
+  conda-python-tests:
+    needs: conda-python-build
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-python-tests.yaml@branch-23.08
+    with:
+      build_type: pull-request
+  docs-build:
+    needs: conda-python-build
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/custom-job.yaml@branch-23.08
+    with:
+      build_type: pull-request
+      arch: "amd64"
+      container_image: "rapidsai/ci:latest"
+      run_script: "ci/build_docs.sh"
+  wheel-build-pylibwholegraph:
+    needs: checks
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/wheels-build.yaml@branch-23.08
+    with:
+      build_type: pull-request
+      script: ci/build_wheel.sh
+  wheel-test-pylibwholegraph:
+    needs: wheel-build-pylibwholegraph
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/wheels-test.yaml@branch-23.08
+    with:
+      build_type: pull-request
+      script: ci/test_wheel.sh
+      matrix_filter: map(select(.ARCH == "amd64"))

.github/workflows/test.yaml

@@ -0,0 +1,42 @@
+name: test
+
+on:
+  workflow_dispatch:
+    inputs:
+      branch:
+        required: true
+        type: string
+      date:
+        required: true
+        type: string
+      sha:
+        required: true
+        type: string
+
+jobs:
+  conda-cpp-tests:
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-cpp-tests.yaml@branch-23.08
+    with:
+      build_type: nightly
+      branch: ${{ inputs.branch }}
+      date: ${{ inputs.date }}
+      sha: ${{ inputs.sha }}
+  conda-pytorch-tests:
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/conda-python-tests.yaml@branch-23.08
+    with:
+      build_type: nightly
+      branch: ${{ inputs.branch }}
+      date: ${{ inputs.date }}
+      sha: ${{ inputs.sha }}
+  wheel-tests-pylibwholegraph:
+    secrets: inherit
+    uses: rapidsai/shared-action-workflows/.github/workflows/wheels-test.yaml@branch-23.08
+    with:
+      build_type: nightly
+      branch: ${{ inputs.branch }}
+      date: ${{ inputs.date }}
+      sha: ${{ inputs.sha }}
+      script: ci/test_wheel.sh
+      matrix_filter: map(select(.ARCH == "amd64"))

.gitignore

@@ -1,5 +1,7 @@
 ## Common
 __pycache__
+build*/
+.pytest_cache/
 *.pyc
 *.a
 *.o
@@ -14,6 +16,9 @@ __pycache__
 *~
 DartConfiguration.tcl
 .DS_Store
+*.egg-info
+*.egg
+env.yaml
 
 # Unit test / coverage reports
 htmlcov/
@@ -69,14 +74,16 @@ cmake-build-debug/
 ## Doxygen
 cpp/doxygen/html
 
-
 # Sphinx docs & build artifacts
 docs/wholegraph/source/api_docs/api/*
 
 # others
-local_scripts/
-build
-*pyc
-compile_commands.json
-docker_run.bash
-.devcontainer
+.conda/
+.conda-bld/
+.ipynb_checkpoints/
+test-results/
+_skbuild/
+cpp/.idea/
+cpp/cmake-build-debug/
+pylibwholegraph/.idea/
+pylibwholegraph/cmake-build-debug/