This is the official implementation of the paper - Knowledge Base Question Answering using Case-based Reasoning over Subgraphs.
conda create -n pygnn python=3.9
conda activate pygnn
conda install pytorch torchvision torchaudio cudatoolkit=11.1 -c pytorch -c nvidia ## this installs pytorch 1.9
pip install transformers
pip install wandb
conda install pytorch-scatter -c rusty1s
conda install pytorch-sparse -c rusty1s
conda install pytorch-cluster -c rusty1s
conda install pytorch-spline-conv -c rusty1s
conda install pytorch-geometric -c rusty1s -c conda-forge
pip install ordered_setPlease refer to the environment.yml file for an exhaustitve list.
The subgraphs collected by our adaptive subgraph gathering strategy (Sec 3.2) of the paper for all the datasets used in the paper can be downloaded from this link. Download and uncompress the file and you should be able to see a directory for each of the datasets. In each of the directory, you should be able to see the following files {train|valid|dev}_roberta-base_mean_pool_masked_cbr_subgraph_k={25|75}.json. The subgraph for each query is present in these files. Note, that they are mapped to integers - to convert them to strings (i.e. KBids) refer to the {entities, relations}_roberta-base_mean_pool_masked_cbr_subgraph_k={25|75}.txt
Lets consider the filename train_roberta-base_mean_pool_masked_cbr_subgraph_k=25.json.
train - refers to the fact this file denotes the train set
roberta-base_mean_pool_masked - refers to the fact that to obtain the KNN questions, the question representations were obtained by using a roberta-base model followed by a mean pool over the token representations in the last layer. Moreover masked denotes that the entity mentions in each question were replaced by the token (refer to sec 3.1 of the paper for details)
k=25 - means that to obtain the subgraphs, we used paths collected from 25 KNN queries (refer to sec 3.2 of the paper)
Please refer to the Readme in the adaptive_subgraph_collection directory.
The runner.py file is the main file that is needed to run the code. A few of the popular flags are listed below.
python runner.py
--do_train # flag for training
--do_predict # flag for prediction
--add_dist_feature=1 # add distance feature to node embeddings
--add_inv_edges_to_edge_index=1 # add inverse KB edges
--data_dir=<path_to_data_dir>
--data_file_suffix=roberta-base_mean_pool_masked_cbr_subgraph_k=25 # which subgraph file to use?
--dataset_name=webqsp # dataset name
--dist_metric=cosine # distance metric to use (l2 or cosine)
--eval_batch_size=1 # batch size during eval
--eval_steps=100 # how many gradient steps before evaluating on validation
--gradient_accumulation_steps=4 # gradient accumulation steps
--learning_rate=0.0024129869604528702 # learning rate
--logging_steps=10
--loss_metric=txent # loss fn (tx-ent/margin)
--max_grad_norm=1
--num_gcn_layers=3 # num GCN layers
--num_neighbors_eval=5 # number of KNNs at eval
--num_neighbors_train=10 # number of KNNs during train
--num_train_epochs=30
--output_dir=<path_to_output_models>
--temperature=0.06453104622317246 # temperature in loss (txent)
--train_batch_size=1 # train batch size
--transform_input=1 # add linear layer after sparse input embedding layer
--use_fast_rgcn=1 # use fast_rgcn
--use_wandb=1 # use wandb?The pre-trained models and subgraphs can be downloaded from here. The query specific subgraphs are present in the input json files.
The commands to reproduce the results from the paper are present here.
If you use the code, data (e.g. subgraphs) or models, we would be grateful if you cite
@inproceedings{cbr_subg,
title={Knowledge Base Question Answering by Case-based Reasoning over Subgraphs},
author={Das, Rajarshi and Godbole, Ameya and Naik, Ankita and Tower, Elliot and Jia, Robin and Zaheer, Manzil and Hajishirzi, Hannaneh and McCallum, Andrew},
booktitle={ICML},
year={2022}
}