add to build_and_deploy too....

radio-astro-tools · May 31, 2024 · a78104f · a78104f
1 parent 42586c6
commit a78104f
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Showing 2 changed files with 7 additions and 9 deletions.
diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
@@ -27,18 +27,17 @@ jobs:
           echo $GITHUB_WORKSPACE
           echo "datapath='${GITHUB_WORKSPACE}/.casa/'; measures_path=datapath; measures_auto_update=True; data_auto_update=True" > $GITHUB_WORKSPACE/config.py
           export CASASITECONFIG=$GITHUB_WORKSPACE/config.py
-          pip install casadata # force this first?
           pip install -r requirements.txt
 
       - name: Export notebooks
         run: |
-            JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
-            JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
-            JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
-            JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
-            JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
-            JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
-            JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert casa_to_spectralcube_guide/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert masking_and_moments/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert parallel_spectral_fitting/*.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DameCube.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert PVDiagramPlotting.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
+            CASASITECONFIG=$GITHUB_WORKSPACE/config.py JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert DiskPVExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
             # JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectExample.ipynb --execute --to html --ExecutePreprocessor.kernel_name=python
             # JUPYTER_CONFIG_DIR=./.jupyter jupyter nbconvert SpectralCubeReprojectMaskExample_v4p1.ipynb.ipynb --execute --to html --ExecutePreprocessor.kerne]l_name=python
 

diff --git a/requirements.txt b/requirements.txt
@@ -16,6 +16,5 @@ git+https://github.com/radio-astro-tools/radio-beam/#egg=radio-beam
 git+https://github.com/radio-astro-tools/pvextractor/#egg=pvextractor
 dask[complete]
 dask-image
-casadata
 casatools
 casatasks