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Initial version of image comparison instead of file comparison #106

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merged 38 commits into from
Sep 18, 2023
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7574bcb
Initial version of image comparison instead of file comparison
anayden Aug 29, 2023
d4e06ef
Use Structural Similarity Index to compare images
anayden Sep 2, 2023
4fccc45
Improve comparison webpages
anayden Sep 3, 2023
07704f0
Fix Bio-Easel warning
AntonPetrov Sep 12, 2023
a130f85
Ignore all png files generated by tests
AntonPetrov Sep 12, 2023
b15a322
Update TestSkipRibovoreFilters test example
AntonPetrov Sep 12, 2023
759dc51
Add pylintrc
AntonPetrov Sep 12, 2023
be74718
Fix linter
anayden Sep 12, 2023
083025e
Mark test result HTML files for easier verification
anayden Sep 12, 2023
b50f14d
Fix existing png file problem
anayden Sep 12, 2023
ea5d80c
Move html reports to tests/html
AntonPetrov Sep 13, 2023
2babe71
Delete HTML reports before running tests
AntonPetrov Sep 13, 2023
8ddc90d
Do not create html reports for tsv file comparison
AntonPetrov Sep 13, 2023
4f01cf5
Use none in jinja template
AntonPetrov Sep 13, 2023
e3e3595
Pass test name to html report
AntonPetrov Sep 13, 2023
578f3ed
Adjust baseDeltaY to accommodate new header
AntonPetrov Sep 13, 2023
279dc3d
Do not remove html files generated by tests
AntonPetrov Sep 13, 2023
bd34378
Fix R-scape copy destination
AntonPetrov Sep 14, 2023
0e4042a
Update ribovore/infernal/easel installation
AntonPetrov Sep 14, 2023
9de74bc
Update ribovore build stage name
AntonPetrov Sep 14, 2023
30914a7
Typo fix
AntonPetrov Sep 14, 2023
59cab57
Delete all ribovore models
AntonPetrov Sep 14, 2023
0f9823b
Fix Rscape path
AntonPetrov Sep 14, 2023
00f6225
Update TestRfamAccession tests
AntonPetrov Sep 14, 2023
6fe4b6a
Update R-scape installation
AntonPetrov Sep 16, 2023
320b94d
Delete unneeded ribovore files
AntonPetrov Sep 17, 2023
b545870
Fix ribovore paths
AntonPetrov Sep 17, 2023
a6e9b79
Run pip without caching
AntonPetrov Sep 17, 2023
4b9c5d7
Parse 3-line stockholm files
AntonPetrov Sep 18, 2023
f9e157e
Deal with 3-line stockholm
AntonPetrov Sep 18, 2023
7715756
Update one TestForceTemplate example file
AntonPetrov Sep 18, 2023
e1a4fd7
Update one TestGtrnadbDomainIsotype example file
AntonPetrov Sep 18, 2023
e05fb06
Update TestRfam examples
AntonPetrov Sep 18, 2023
6582349
Update TestRibovisionLSU example
AntonPetrov Sep 18, 2023
8ae26cf
Lower similarity threshold for test images
AntonPetrov Sep 18, 2023
6476583
Resize images if sizes are different
AntonPetrov Sep 18, 2023
ca1342a
Fix comments
AntonPetrov Sep 18, 2023
9e0d9ae
Update TestSingleEntry examples
AntonPetrov Sep 18, 2023
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2 changes: 1 addition & 1 deletion .dockerignore
Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ docs/_*
.github
.vscode
.git
1.4/
1.4/
2 changes: 1 addition & 1 deletion .github/workflows/base-image.yml
Original file line number Diff line number Diff line change
Expand Up @@ -73,4 +73,4 @@ jobs:
```text
${{ steps.docker_meta.outputs.labels }}
```
edit-mode: replace
edit-mode: replace
3 changes: 2 additions & 1 deletion .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -12,7 +12,8 @@ output/*
headers.txt
traveler-input.fasta
tests/results
tests/*.html
tests/html
tests/**/*.png
.vscode
docs/_build/*
results/**
Expand Down
3 changes: 3 additions & 0 deletions .pre-commit-config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,9 @@ repos:
rev: v2.15.6
hooks:
- id: pylint
args:
- --rcfile=.pylintrc
- --disable=F0401,W0402,E1101,C0114
- repo: https://github.com/PyCQA/isort
rev: 5.12.0
hooks:
Expand Down
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