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Fix Bio-Easel warning
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Several required folders were missing from the install
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@AntonPetrov
AntonPetrov committed Sep 12, 2023
1 parent 4fccc45 commit 07704f0
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions base_image/Dockerfile
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Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,9 @@ RUN \
RUN \
cd Bio-Easel && perl Makefile.PL
RUN \
cd Bio-Easel && make && make install DESTDIR=/install/
cd Bio-Easel && make && make install DESTDIR=/install/ && \
cp -rv /Bio-Easel/lib /install/Bio-Easel/lib && \
cp -rv /Bio-Easel/blib/lib /install/Bio-Easel/blib/lib

FROM build AS easel

Expand Down Expand Up @@ -112,7 +114,6 @@ ENV \
RIBOEASELDIR="$RNA/ribovore/infernal/easel/miniapps" \
RIBOTIMEDIR=/usr/bin \
RIBODIR="$RNA/ribovore/ribovore" \
# ???

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@anayden

anayden Sep 12, 2023

Collaborator

The comment (not very eloquently) suggested I was not sure whether this env var is needed :)

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@AntonPetrov

AntonPetrov Sep 12, 2023

Author Member

It's indeed needed 😅

Not as eloquent as:

# Forgive me, for I have hacked
# In the name of the Compiler, the Debugger, and the Holy Stack Trace

but we'll get back to it later 🙊
BIOEASELDIR="$RNA/Bio-Easel/blib/lib:$RNA/Bio-Easel/blib/arch:$RNA/Bio-Easel:$RNA/Bio-Easel/lib" \
LC_ALL="C.UTF-8" LANG="C.UTF-8" \
DATAPATH="/rna/RNAstructure/data_tables/"
Expand Down Expand Up @@ -162,4 +163,3 @@ COPY --from=traveler /install/utils/* ${RNA}/traveler/utils/
# Forgive me, for I have hacked
# In the name of the Compiler, the Debugger, and the Holy Stack Trace
COPY --from=traveler "/usr/local/lib64/libstdc++.so.6.0.32" "/usr/lib/x86_64-linux-gnu/libstdc++.so.6.0.30"

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