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zero length reads #106

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Mar 3, 2023
Merged

zero length reads #106

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2 changes: 1 addition & 1 deletion src/strpkg/extract.nim
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Original file line number Diff line number Diff line change
Expand Up @@ -64,7 +64,7 @@ proc to_tread(aln:Record, genome_str:TableRef[string, Lapper[region]], counts: v
var repeat_count: int
var align_length: int
var rep = aln.get_repeat(genome_str, counts, repeat_count, align_length, opts)
doAssert align_length > 0, aln.tostring
doAssert align_length >= 0, aln.tostring
doAssert repeat_count < 256, aln.tostring

result = tread(tid:aln.tid.int32,
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