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Yale (#38)
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* Changed 'grubaugh-' to 'yale-'

* Moved renamed scheme into correct dir
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ChrisgKent authored Aug 21, 2024
1 parent 39576fb commit 9c3a625
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Showing 54 changed files with 36 additions and 36 deletions.
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# grubaugh-dev1 400bp v1.0.0
# yale-dev1 400bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-dev1/400/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-dev1/400/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primer scheme for dengue virus serotype 1
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev1",
"schemename": "yale-dev1",
"primer_bed_md5": "d9313af2b6e87cf9afc0fee4d17ebeb0",
"reference_fasta_md5": "cad1eaac8e6d90db62c25c8a8b9a644b",
"status": "validated",
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev1",
"schemename": "yale-dev1",
"primer_bed_md5": "d9313af2b6e87cf9afc0fee4d17ebeb0",
"reference_fasta_md5": "cad1eaac8e6d90db62c25c8a8b9a644b",
"status": "validated",
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# grubaugh-dev2 400bp v1.0.0
# yale-dev2 400bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-dev2/400/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-dev2/400/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primer scheme for dengue virus serotype 2
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev2",
"schemename": "yale-dev2",
"primer_bed_md5": "d57ba5b105236d5df89ce440a1da63a2",
"reference_fasta_md5": "9736a9a27e5ffeacd1c94019123af2f0",
"status": "validated",
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev2",
"schemename": "yale-dev2",
"primer_bed_md5": "d57ba5b105236d5df89ce440a1da63a2",
"reference_fasta_md5": "9736a9a27e5ffeacd1c94019123af2f0",
"status": "validated",
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# grubaugh-dev3 400bp v1.0.0
# yale-dev3 400bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-dev3/400/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-dev3/400/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primer scheme for dengue virus serotype 3
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev3",
"schemename": "yale-dev3",
"primer_bed_md5": "bcbe1286c8c3e415764ed20fe4aa7a09",
"reference_fasta_md5": "b0775470da71b7e22b05ab404755762e",
"status": "validated",
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev3",
"schemename": "yale-dev3",
"primer_bed_md5": "bcbe1286c8c3e415764ed20fe4aa7a09",
"reference_fasta_md5": "b0775470da71b7e22b05ab404755762e",
"status": "validated",
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# grubaugh-dev4 400bp v1.0.0
# yale-dev4 400bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-dev4/400/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-dev4/400/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primer scheme for dengue virus serotype 4
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev4",
"schemename": "yale-dev4",
"primer_bed_md5": "472825670930a1f8a4333a3fe72259cc",
"reference_fasta_md5": "fd26f6849d42201db457b46461554839",
"status": "validated",
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-dev4",
"schemename": "yale-dev4",
"primer_bed_md5": "472825670930a1f8a4333a3fe72259cc",
"reference_fasta_md5": "fd26f6849d42201db457b46461554839",
"status": "validated",
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# grubaugh-mpox 2000bp v1.0.0
# yale-mpox 2000bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-mpox/2000/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-mpox/2000/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primerscheme designed for the global outbreak of human Monkeypox virus (hMPXV)
{
"ampliconsize": 2000,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-mpox",
"schemename": "yale-mpox",
"primer_bed_md5": "f9fe29b44517167f18f9eaf66a141c44",
"reference_fasta_md5": "585ffed8901fb4478dae3b9895e14376",
"status": "validated",
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{
"ampliconsize": 2000,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-mpox",
"schemename": "yale-mpox",
"primer_bed_md5": "f9fe29b44517167f18f9eaf66a141c44",
"reference_fasta_md5": "585ffed8901fb4478dae3b9895e14376",
"status": "validated",
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# grubaugh-powassan-virus 400bp v1.0.0
# yale-powassan-virus 400bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-powassan-virus/400/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-powassan-virus/400/v1.0.0)

## Description

Expand All @@ -16,7 +16,7 @@ Primerscheme designed for the whole genome of Powassan virus
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-powassan-virus",
"schemename": "yale-powassan-virus",
"primer_bed_md5": "0ace7f3f32d025559f81cf7848bd96ca",
"reference_fasta_md5": "45de4c26388d5f33eeb33d03eaa6594d",
"status": "tested",
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-powassan-virus",
"schemename": "yale-powassan-virus",
"primer_bed_md5": "0ace7f3f32d025559f81cf7848bd96ca",
"reference_fasta_md5": "45de4c26388d5f33eeb33d03eaa6594d",
"status": "tested",
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# grubaugh-strep-pneumo 2000bp v1.0.0
# yale-strep-pneumo 2000bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-strep-pneumo/2000/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-strep-pneumo/2000/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primerscheme designed for the whole genome of Streptococcus pneumoniae
{
"ampliconsize": 2000,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-strep-pneumo",
"schemename": "yale-strep-pneumo",
"primer_bed_md5": "ca2090fa4c64b75fd5d83c2f7858908f",
"reference_fasta_md5": "fe6730ebb4572f3e7d3e6d7f9bf45bdb",
"status": "tested",
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{
"ampliconsize": 2000,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-strep-pneumo",
"schemename": "yale-strep-pneumo",
"primer_bed_md5": "ca2090fa4c64b75fd5d83c2f7858908f",
"reference_fasta_md5": "fe6730ebb4572f3e7d3e6d7f9bf45bdb",
"status": "tested",
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# grubaugh-tb 2000bp v1.0.0
# yale-tb 2000bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-tb/2000/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-tb/2000/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primerscheme designed for the whole genome of Mycobacterium tuberculosis
{
"ampliconsize": 2000,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-tb",
"schemename": "yale-tb",
"primer_bed_md5": "7e720bec9e7f68eb367f5a67024a93b1",
"reference_fasta_md5": "a5cd7cf2ad058fcad2e341d285cf16d7",
"status": "tested",
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{
"ampliconsize": 2000,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-tb",
"schemename": "yale-tb",
"primer_bed_md5": "7e720bec9e7f68eb367f5a67024a93b1",
"reference_fasta_md5": "a5cd7cf2ad058fcad2e341d285cf16d7",
"status": "tested",
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# grubaugh-west-nile-virus 400bp v1.0.0
# yale-west-nile-virus 400bp v1.0.0

[primalscheme labs](https://labs.primalscheme.com/detail/grubaugh-west-nile-virus/400/v1.0.0)
[primalscheme labs](https://labs.primalscheme.com/detail/yale-west-nile-virus/400/v1.0.0)

## Description

Expand All @@ -14,7 +14,7 @@ Primerscheme designed for the whole genome of West Nile Virus
{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-west-nile-virus",
"schemename": "yale-west-nile-virus",
"primer_bed_md5": "8573a30b249950a1ae418d2c1a1c9c7e",
"reference_fasta_md5": "52385748c447473eea248d081b03eb1b",
"status": "tested",
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{
"ampliconsize": 400,
"schemeversion": "v1.0.0",
"schemename": "grubaugh-west-nile-virus",
"schemename": "yale-west-nile-virus",
"primer_bed_md5": "8573a30b249950a1ae418d2c1a1c9c7e",
"reference_fasta_md5": "52385748c447473eea248d081b03eb1b",
"status": "tested",
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