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swap to libpysal.io.open #26

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42 changes: 21 additions & 21 deletions mgwr/tests/test_gwr.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,7 +16,7 @@
class TestGWRGaussian(unittest.TestCase):
def setUp(self):
data_path = os.path.join(os.path.dirname(__file__),'georgia/GData_utm.csv')
data = libpysal.open(data_path)
data = libpysal.io.open(data_path)
self.coords = list(zip(data.by_col('X'), data.by_col('Y')))
self.y = np.array(data.by_col('PctBach')).reshape((-1,1))
rural = np.array(data.by_col('PctRural')).reshape((-1,1))
Expand All @@ -25,10 +25,10 @@ def setUp(self):
fb = np.array(data.by_col('PctFB')).reshape((-1,1))
self.X = np.hstack([rural, pov, black])
self.mgwr_X = np.hstack([fb, black, rural])
self.BS_F = libpysal.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_BS_F_listwise.csv'))
self.BS_NN = libpysal.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_BS_NN_listwise.csv'))
self.GS_F = libpysal.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_GS_F_listwise.csv'))
self.GS_NN =libpysal.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_GS_NN_listwise.csv'))
self.BS_F = libpysal.io.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_BS_F_listwise.csv'))
self.BS_NN = libpysal.io.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_BS_NN_listwise.csv'))
self.GS_F = libpysal.io.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_GS_F_listwise.csv'))
self.GS_NN =libpysal.io.open(os.path.join(os.path.dirname(__file__),'georgia/georgia_GS_NN_listwise.csv'))
MGWR_path = os.path.join(os.path.dirname(__file__),'mgwr_example.p')
self.MGWR = pk.load(open(MGWR_path, 'rb'))

Expand Down Expand Up @@ -104,13 +104,13 @@ def test_BS_NN(self):
inf = np.array(self.BS_NN.by_col(' influence')).reshape((-1,1))
cooksD = np.array(self.BS_NN.by_col(' CooksD')).reshape((-1,1))
local_corr = os.path.join(os.path.dirname(__file__),'local_corr.csv')
corr1 = np.array(libpysal.open(local_corr))
corr1 = np.array(libpysal.io.open(local_corr))
local_vif = os.path.join(os.path.dirname(__file__),'local_vif.csv')
vif1 = np.array(libpysal.open(local_vif))
vif1 = np.array(libpysal.io.open(local_vif))
local_cn = os.path.join(os.path.dirname(__file__),'local_cn.csv')
cn1 = np.array(libpysal.open(local_cn))
cn1 = np.array(libpysal.io.open(local_cn))
local_vdp = os.path.join(os.path.dirname(__file__),'local_vdp.csv')
vdp1 = np.array(libpysal.open(local_vdp), dtype=np.float64)
vdp1 = np.array(libpysal.io.open(local_vdp), dtype=np.float64)
spat_var_p_vals = [0. , 0.0 , 0.5, 0.2]

model = GWR(self.coords, self.y, self.X, bw=90.000, fixed=False,
Expand Down Expand Up @@ -381,7 +381,7 @@ def test_Prediction(self):

def test_BS_NN_longlat(self):
GA_longlat = os.path.join(os.path.dirname(__file__),'ga_bs_nn_longlat_listwise.csv')
self.BS_NN_longlat = libpysal.open(GA_longlat)
self.BS_NN_longlat = libpysal.io.open(GA_longlat)

coords_longlat = list(zip(self.BS_NN_longlat.by_col(' x_coord'), self.BS_NN_longlat.by_col(' y_coord')))
est_Int = self.BS_NN_longlat.by_col(' est_Intercept')
Expand Down Expand Up @@ -442,7 +442,7 @@ def test_BS_NN_longlat(self):
class TestGWRPoisson(unittest.TestCase):
def setUp(self):
data_path = os.path.join(os.path.dirname(__file__),'tokyo/Tokyomortality.csv')
data = libpysal.open(data_path, mode='Ur')
data = libpysal.io.open(data_path, mode='Ur')
self.coords = list(zip(data.by_col('X_CENTROID'), data.by_col('Y_CENTROID')))
self.y = np.array(data.by_col('db2564')).reshape((-1,1))
self.off = np.array(data.by_col('eb2564')).reshape((-1,1))
Expand All @@ -451,11 +451,11 @@ def setUp(self):
POP = np.array(data.by_col('POP65')).reshape((-1,1))
UNEMP = np.array(data.by_col('UNEMP')).reshape((-1,1))
self.X = np.hstack([OCC,OWN,POP,UNEMP])
self.BS_F = libpysal.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_BS_F_listwise.csv'))
self.BS_NN = libpysal.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_BS_NN_listwise.csv'))
self.GS_F = libpysal.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_GS_F_listwise.csv'))
self.GS_NN = libpysal.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_GS_NN_listwise.csv'))
self.BS_NN_OFF = libpysal.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_BS_NN_OFF_listwise.csv'))
self.BS_F = libpysal.io.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_BS_F_listwise.csv'))
self.BS_NN = libpysal.io.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_BS_NN_listwise.csv'))
self.GS_F = libpysal.io.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_GS_F_listwise.csv'))
self.GS_NN = libpysal.io.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_GS_NN_listwise.csv'))
self.BS_NN_OFF = libpysal.io.open(os.path.join(os.path.dirname(__file__),'tokyo/tokyo_BS_NN_OFF_listwise.csv'))

def test_BS_F(self):
est_Int = self.BS_F.by_col(' est_Intercept')
Expand Down Expand Up @@ -712,7 +712,7 @@ def test_GS_NN(self):
class TestGWRBinomial(unittest.TestCase):
def setUp(self):
data_path = os.path.join(os.path.dirname(__file__),'clearwater/landslides.csv')
data = libpysal.open(data_path)
data = libpysal.io.open(data_path)
self.coords = list(zip(data.by_col('X'), data.by_col('Y')))
self.y = np.array(data.by_col('Landslid')).reshape((-1,1))
ELEV = np.array(data.by_col('Elev')).reshape((-1,1))
Expand All @@ -722,10 +722,10 @@ def setUp(self):
SOUTH = np.array(data.by_col('AbsSouth')).reshape((-1,1))
DIST = np.array(data.by_col('DistStrm')).reshape((-1,1))
self.X = np.hstack([ELEV, SLOPE, SIN, COS, SOUTH, DIST])
self.BS_F = libpysal.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_BS_F_listwise.csv'))
self.BS_NN = libpysal.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_BS_NN_listwise.csv'))
self.GS_F = libpysal.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_GS_F_listwise.csv'))
self.GS_NN = libpysal.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_GS_NN_listwise.csv'))
self.BS_F = libpysal.io.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_BS_F_listwise.csv'))
self.BS_NN = libpysal.io.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_BS_NN_listwise.csv'))
self.GS_F = libpysal.io.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_GS_F_listwise.csv'))
self.GS_NN = libpysal.io.open(os.path.join(os.path.dirname(__file__),'clearwater/clearwater_GS_NN_listwise.csv'))

def test_BS_F(self):
est_Int = self.BS_F.by_col(' est_Intercept')
Expand Down
2 changes: 1 addition & 1 deletion mgwr/tests/test_sel_bw.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
class TestSelBW(unittest.TestCase):
def setUp(self):
data_path = os.path.join(os.path.dirname(__file__),'georgia/GData_utm.csv')
data = libpysal.open(data_path)
data = libpysal.io.open(data_path)
self.coords = list(zip(data.by_col('X'), data.by_col('Y')))
self.y = np.array(data.by_col('PctBach')).reshape((-1,1))
rural = np.array(data.by_col('PctRural')).reshape((-1,1))
Expand Down