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Bump cython, fixes for tests, and fixes for deprecation warnings #298

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Bump cython, fixes for tests, and fixes for deprecation warnings

Bump cython, fixes for tests, and fixes for deprecation warnings #298

Run time

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Job Run time
tests (ubuntu-latest, 3.11)
2m 19s
tests (macos-latest, 3.11)
1m 59s
tests (windows-latest, 3.11)
2m 10s
6m 28s