Bump cython, fixes for tests, and fixes for deprecation warnings #162
Workflow file for this run
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| name: ZOLTAN/MPI Tests | |
| on: | |
| pull_request: | |
| schedule: | |
| # Run test at 0400 UTC on day 1 of every month to create auto-generated | |
| # code afresh and cache it. | |
| - cron: '0 4 1 * *' # Ref https://crontab.guru/#0_4_1_*_* | |
| jobs: | |
| tests: | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: [3.11] | |
| env: | |
| USE_TRILINOS: 1 | |
| ZOLTAN_INCLUDE: /usr/include/trilinos | |
| ZOLTAN_LIBRARY: /usr/lib/x86_64-linux-gnu | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install Linux packages ZOLTAN support | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y openmpi-bin libopenmpi-dev libtrilinos-zoltan-dev | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| channels: conda-forge | |
| - name: Install dependencies | |
| run: | | |
| conda info | |
| conda install -c conda-forge numpy cython | |
| python -m pip install --upgrade pip setuptools wheel | |
| python -m pip install mpi4py | |
| python -m pip install https://github.com/pypr/cyarray/zipball/master | |
| python -m pip install --no-build-isolation https://github.com/pypr/pyzoltan/zipball/master | |
| python -m pip install https://github.com/pypr/compyle/zipball/master | |
| python -m pip install -r requirements.txt | |
| python -m pip install -r requirements-test.txt | |
| python setup.py develop | |
| # Cache auto-generated code. Cache key changes every month. | |
| # Thanks https://stackoverflow.com/a/60942437 | |
| - name: Get month to use as cache key. | |
| id: month | |
| run: echo "month==$(date +'%m')" >> $GITHUB_OUTPUT | |
| - name: Deal with auto-generated code cache | |
| uses: actions/cache@v4 | |
| with: | |
| path: | | |
| ~/.pysph | |
| ~/.compyle | |
| key: zoltan-${{ steps.month.outputs.month }} | |
| - name: Run tests | |
| run: | | |
| python -m pytest -v -m 'slow or parallel' |