fix SEI notebook #3394
Workflow file for this run
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| name: Run benchmarks on push | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| benchmarks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.8 | |
| - name: Install Linux system dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt install gfortran gcc libopenblas-dev | |
| - name: Install python dependencies | |
| run: | | |
| python -m pip install --upgrade pip wheel setuptools virtualenv asv wget cmake casadi numpy | |
| - name: Install SuiteSparse and Sundials | |
| run: python scripts/install_KLU_Sundials.py | |
| - name: Fetch base branch | |
| run: | | |
| # This workflow also runs for merge commits | |
| # on develop. In this case, we don't want to be | |
| # fetching the develop branch. | |
| current_branch=$(git rev-parse --abbrev-ref HEAD) | |
| # This workflow should also run on forks; hence, | |
| # we should fetch the upstream develop branch. | |
| git remote add upstream https://github.com/pybamm-team/PyBaMM/ | |
| if [ $current_branch != "develop" ]; then | |
| git fetch upstream develop:develop | |
| fi | |
| - name: Run benchmarks | |
| run: | | |
| asv machine --machine "GitHubRunner" | |
| # Get IDs of branch and PR commits | |
| BASE_COMMIT=$(git rev-parse develop) | |
| HEAD_COMMIT=$(git rev-parse HEAD) | |
| echo $BASE_COMMIT | tee commits_to_compare.txt | |
| echo $HEAD_COMMIT | tee -a commits_to_compare.txt | |
| asv run HASHFILE:commits_to_compare.txt --m "GitHubRunner" --show-stderr --strict -v | |
| - name: Compare commits' benchmark results | |
| run: | | |
| BASE_COMMIT=$(head -1 commits_to_compare.txt) | |
| HEAD_COMMIT=$(tail -1 commits_to_compare.txt) | |
| echo "SUMMARY OF CHANGES" | |
| echo "==================" | |
| asv compare $BASE_COMMIT $HEAD_COMMIT | tee compare_result.txt | |
| # Make sure grep returns error code 0 even if code 1 is | |
| # returned because no match is found | |
| REGRESSIONS=$({ grep "+" compare_result.txt || test $? = 1; }) | |
| if [ ! -z "$REGRESSIONS" ]; \ | |
| then \ | |
| echo "REGRESSIONS FOUND"; \ | |
| echo "================="; \ | |
| echo "$REGRESSIONS"; \ | |
| echo "================="; \ | |
| printf "Found %d regression(s)\n" $(echo "$REGRESSIONS" | wc -l); \ | |
| exit 1; \ | |
| fi |