Run all checks #1046
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| name: Run all checks | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| inputs: | |
| ref: | |
| description: 'The git ref to build the package for' | |
| required: false | |
| default: '' | |
| type: string | |
| use_lkg: | |
| description: 'Whether to use the last known good versions of dependencies' | |
| required: false | |
| default: True | |
| type: boolean | |
| # nightly | |
| schedule: | |
| - cron: '0 0 * * *' | |
| # Only run once per PR, canceling any previous runs | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }} | |
| cancel-in-progress: true | |
| # Precompute the ref if the workflow was triggered by a workflow dispatch rather than copying this logic repeatedly | |
| env: | |
| ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} | |
| # we want to use the LKG if that is explicitly requested, or if we're in a PR, but not a nightly run | |
| # the final `|| ''` is because env vars are always converted to strings and the string 'false' is truthy (!!) | |
| # (see https://github.com/orgs/community/discussions/25645) | |
| use_lkg: ${{ (github.event_name == 'workflow_dispatch' && inputs.use_lkg) || github.event_name == 'pull_request' || ''}} | |
| jobs: | |
| eval: | |
| name: Evaluate changes | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.ref }} | |
| fetch-depth: 2 | |
| # We want to enforce the following rules for PRs: | |
| # * if all modifications are to README.md | |
| # no testing is needed | |
| # * if there are modifications to docs/* or to any code | |
| # then docs need to be built to verify consistency | |
| # * if there are modifications to notebooks/* or to any code | |
| # then notebooks need to be run to verify consistency | |
| # * for any code changes (or changes to metadata files) | |
| # linting and testing should be run | |
| # For a PR build, HEAD will be the merge commit, and we want to diff against the base branch, | |
| # which will be the first parent: HEAD^ | |
| # (For non-PR changes, we will always perform all CI tasks) | |
| # Note that GitHub Actions provides path filters, but they operate at the workflow level, not the job level | |
| - name: Determine type of code change | |
| run: | | |
| if ($env:GITHUB_EVENT_NAME -eq 'pull_request') { | |
| $editedFiles = git diff HEAD^ --name-only | |
| $editedFiles # echo edited files to enable easier debugging | |
| $codeChanges = $false | |
| $docChanges = $false | |
| $nbChanges = $false | |
| $changeType = "none" | |
| foreach ($file in $editedFiles) { | |
| switch -Wildcard ($file) { | |
| "README.md" { Continue } | |
| ".gitignore" { Continue } | |
| "econml/_version.py" { Continue } | |
| "prototypes/*" { Continue } | |
| "images/*" { Continue } | |
| "doc/*" { $docChanges = $true; Continue } | |
| "notebooks/*" { $nbChanges = $true; Continue } | |
| default { $codeChanges = $true; Continue } | |
| } | |
| } | |
| } | |
| echo "buildDocs=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or ($docChanges -or $codeChanges))" >> $env:GITHUB_OUTPUT | |
| echo "buildNbs=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or ($nbChanges -or $codeChanges))" >> $env:GITHUB_OUTPUT | |
| echo "testCode=$(($env:GITHUB_EVENT_NAME -ne 'pull_request') -or $codeChanges)" >> $env:GITHUB_OUTPUT | |
| shell: pwsh | |
| id: eval | |
| outputs: | |
| buildDocs: ${{ steps.eval.outputs.buildDocs }} | |
| buildNbs: ${{ steps.eval.outputs.buildNbs }} | |
| testCode: ${{ steps.eval.outputs.testCode }} | |
| lint: | |
| name: Lint code | |
| needs: [eval] | |
| if: ${{ needs.eval.outputs.testCode == 'True' }} | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.ref }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Ensure latest pip and setuptools | |
| run: python -m pip install --upgrade pip && pip install --upgrade setuptools | |
| - name: Run Ruff | |
| run: 'pip install ruff && ruff check' | |
| notebooks: | |
| name: Run notebooks | |
| needs: [eval] | |
| if: ${{ needs.eval.outputs.buildNbs == 'True' }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| kind: [except-customer-scenarios, customer-scenarios] | |
| include: | |
| - kind: "except-customer-scenarios" | |
| extras: "[tf,plt,ray]" | |
| pattern: "(?!CustomerScenarios)" | |
| install_graphviz: true | |
| version: '3.8' # no supported version of tensorflow for 3.9 | |
| - kind: "customer-scenarios" | |
| extras: "[plt,dowhy]" | |
| pattern: "CustomerScenarios" | |
| version: '3.9' | |
| install_graphviz: false | |
| fail-fast: false | |
| env: | |
| id_string: ${{ matrix.kind }}-${{ matrix.version }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.ref }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.version }} | |
| - name: Install uv | |
| # check if we're running on windows | |
| run: ${{ runner.os == 'Windows' && 'irm https://astral.sh/uv/install.ps1 | iex' || 'curl -LsSf https://astral.sh/uv/install.sh | sh' }} | |
| - name: Install graphviz | |
| run: sudo apt-get -yq install graphviz | |
| if: ${{ matrix.install_graphviz }} | |
| # Add verbose flag to pip installation if in debug mode | |
| - name: Install econml | |
| run: uv pip install --system -e .${{ matrix.extras }} ${{ fromJSON('["","-v"]')[runner.debug] }} ${{ env.use_lkg && '-r lkg-notebook.txt' }} | |
| # Install notebook requirements (if not already done as part of lkg) | |
| - name: Install notebook requirements | |
| run: uv pip install --system jupyter jupyter-client nbconvert nbformat seaborn xgboost tqdm | |
| if: ${{ !env.use_lkg }} | |
| - name: Save installed packages | |
| run: pip freeze --exclude-editable > notebooks-${{ env.id_string }}-requirements.txt | |
| - name: Upload installed packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: requirements-${{ env.id_string }} | |
| path: notebooks-${{ env.id_string }}-requirements.txt | |
| - name: Install pytest | |
| run: uv pip install --system pytest pytest-xdist pytest-cov coverage[toml] | |
| - name: Run notebook tests | |
| run: python -m pytest | |
| id: run_tests | |
| env: | |
| PYTEST_ADDOPTS: '-m "notebook"' | |
| NOTEBOOK_DIR_PATTERN: ${{ matrix.pattern }} | |
| COVERAGE_PROCESS_START: 'pyproject.toml' | |
| - name: Make coverage filename unique | |
| run: mv .coverage .coverage.${{ env.id_string }} | |
| # Run whether or not the tests passed, but only if they ran at all | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| - name: Upload coverage report | |
| uses: actions/upload-artifact@v4 | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| with: | |
| name: coverage-${{ env.id_string }} | |
| path: .coverage.${{ env.id_string }} | |
| # need to include hidden files since path starts with . | |
| include-hidden-files: true | |
| - name: Make test XML filename unique | |
| run: mv junit/test-results.xml ${{ env.id_string }}-test-results.xml | |
| # Run whether or not the tests passed, but only if they ran at all | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| - name: Upload test XML files | |
| uses: actions/upload-artifact@v4 | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| with: | |
| name: tests-${{ env.id_string }} | |
| path: ${{ env.id_string }}-test-results.xml | |
| - name: Upload notebook outputs | |
| uses: actions/upload-artifact@v4 | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| with: | |
| name: notebooks-${{ env.id_string }} | |
| path: notebooks/output/ | |
| tests: | |
| name: "Run tests" | |
| needs: [eval] | |
| if: ${{ needs.eval.outputs.testCode == 'True' }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| kind: [serial, other, dml, main, treatment, ray] | |
| exclude: | |
| # Serial tests fail randomly on mac sometimes, so we don't run them there | |
| - os: macos-latest | |
| kind: serial | |
| # Mac ARM doesn't support tensorflow versions compatible with python 3.8 | |
| - os: macos-latest | |
| python-version: '3.8' | |
| # Ray tests run out of memory on Windows | |
| - os: windows-latest | |
| kind: ray | |
| # Ray doesn't currently support Python 3.12 | |
| - python-version: '3.12' | |
| kind: ray | |
| # Assign the correct package and testing options for each kind of test | |
| include: | |
| - kind: serial | |
| opts: '-m "serial and not ray" -n 1' | |
| extras: "" | |
| - kind: other | |
| opts: '-m "cate_api and not ray" -n auto' | |
| extras: "[tf,plt]" | |
| - kind: dml | |
| opts: '-m "dml and not ray"' | |
| extras: "[tf,plt]" | |
| - kind: main | |
| opts: '-m "not (notebook or automl or dml or serial or cate_api or treatment_featurization or ray)" -n 2' | |
| extras: "[tf,plt,dowhy]" | |
| - kind: treatment | |
| opts: '-m "treatment_featurization and not ray" -n auto' | |
| extras: "[tf,plt]" | |
| - kind: ray | |
| opts: '-m "ray"' | |
| extras: "[ray]" | |
| fail-fast: false | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| id_string: ${{ matrix.os }}-${{ matrix.python-version }}-${{ matrix.kind }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.ref }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install libomp | |
| # lightgbm needs libomp on mac | |
| run: brew install libomp | |
| if: matrix.os == 'macos-latest' | |
| - name: Install uv | |
| # check if we're running on windows | |
| run: ${{ runner.os == 'Windows' && 'irm https://astral.sh/uv/install.ps1 | iex' || 'curl -LsSf https://astral.sh/uv/install.sh | sh' }} | |
| # Add verbose flag to pip installation if in debug mode | |
| - name: Install econml | |
| run: uv pip install --system -e .${{ matrix.extras }} ${{ fromJSON('["","-v"]')[runner.debug] }} ${{ env.use_lkg && '-r lkg.txt' }} | |
| - name: Save installed packages | |
| run: pip freeze --exclude-editable > tests-${{ env.id_string }}-requirements.txt | |
| - name: Upload installed packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: requirements-${{ env.id_string }} | |
| path: tests-${{ env.id_string }}-requirements.txt | |
| - name: Install pytest | |
| run: uv pip install --system pytest pytest-xdist pytest-cov coverage[toml] | |
| - name: Run tests | |
| run: python -m pytest | |
| id: run_tests | |
| env: | |
| PYTEST_ADDOPTS: ${{ matrix.opts }} | |
| COVERAGE_PROCESS_START: 'pyproject.toml' | |
| - name: Make coverage filename unique | |
| run: mv .coverage .coverage.${{ env.id_string }} | |
| # Run whether or not the tests passed, but only if they ran at all | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| - name: Upload coverage report | |
| uses: actions/upload-artifact@v4 | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| with: | |
| name: coverage-${{ env.id_string }} | |
| path: .coverage.${{ env.id_string }} | |
| # need to include hidden files since path starts with . | |
| include-hidden-files: true | |
| - name: Make test XML filename unique | |
| run: mv junit/test-results.xml ${{ env.id_string }}-test-results.xml | |
| # Run whether or not the tests passed, but only if they ran at all | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| - name: Upload test XML files | |
| uses: actions/upload-artifact@v4 | |
| if: success() || failure() && contains(fromJSON('["success", "failure"]'), steps.run_tests.outcome) | |
| with: | |
| name: tests-${{ env.id_string }} | |
| path: ${{ env.id_string }}-test-results.xml | |
| store-reqs-per-env: | |
| name: Store requirements for LKG updates | |
| if: (success() || failure()) && (github.event_name == 'workflow_dispatch' && !inputs.use_lkg || github.event_name == 'schedule') | |
| strategy: | |
| matrix: | |
| kind: [tests] | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| extras: ["[tf,plt,dowhy,ray]"] | |
| include: | |
| # explicitly add the two notebook extras | |
| - kind: notebooks | |
| os: ubuntu-latest | |
| python-version: '3.8' | |
| extras: "[tf,plt,ray]" | |
| - kind: notebooks | |
| os: ubuntu-latest | |
| python-version: '3.9' | |
| extras: "[plt,dowhy]" | |
| exclude: | |
| # Mac ARM doesn't support tensorflow versions compatible with python 3.8 | |
| - os: macos-latest | |
| python-version: '3.8' | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.ref }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install uv | |
| # check if we're running on windows | |
| run: ${{ runner.os == 'Windows' && 'irm https://astral.sh/uv/install.ps1 | iex' || 'curl -LsSf https://astral.sh/uv/install.sh | sh' }} | |
| - name: Install econml | |
| # add all extras used by any of the individual tests, which is a superset of what's actually used anywhere | |
| run: uv pip install --system -e .${{ matrix.extras }} | |
| - name: Install notebook requirements | |
| run: uv pip install --system jupyter jupyter-client nbconvert nbformat seaborn xgboost tqdm | |
| if: matrix.kind == 'notebooks' | |
| - name: Save installed packages | |
| run: pip freeze --exclude-editable > lkg-${{ matrix.kind }}-${{ matrix.os }}-${{ matrix.python-version }}.txt | |
| - name: Upload installed packages | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: lkg-${{ matrix.kind }}-${{ matrix.os }}-${{ matrix.python-version }} | |
| path: lkg-${{ matrix.kind }}-${{ matrix.os }}-${{ matrix.python-version }}.txt | |
| coverage-report: | |
| name: "Coverage report" | |
| needs: [tests, notebooks] | |
| if: success() || failure() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.ref }} | |
| - name: Get coverage reports | |
| uses: actions/download-artifact@v4 | |
| with: | |
| pattern: coverage-* | |
| path: coverage | |
| merge-multiple: true | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.8' | |
| - name: Install coverage | |
| run: pip install coverage[toml] | |
| - name: Combine coverage reports | |
| run: coverage combine coverage/ | |
| - name: Generate coverage report | |
| run: coverage report -m --format=markdown > $GITHUB_STEP_SUMMARY | |
| - name: Generate coverage html --fail-under=86 | |
| run: coverage html | |
| - name: Upload coverage report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-report | |
| path: htmlcov | |
| merge-artifacts: | |
| name: "Merge artifacts" | |
| needs: [coverage-report, tests, notebooks, store-reqs-per-env] | |
| if: success() || failure() | |
| strategy: | |
| matrix: | |
| artifact: [requirements, tests, coverage, notebooks, lkg-tests, lkg-notebooks] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: "Merge artifacts" | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| name: ${{ matrix.artifact }} | |
| pattern: "${{ matrix.artifact }}-*" | |
| delete-merged: true | |
| # if we are re-running a job in a subsequent attempt, some of the other artifacts may not exist in this attempt (e.g. notebooks, if only non-notebook tests failed) | |
| # Unlike with plain upload-artifact, there's no way to ignore the situation where no files are found when using the v4 merge action | |
| # (see https://github.com/actions/upload-artifact/issues/520), so just continue on error isntead | |
| continue-on-error: true | |
| generate-lkg: | |
| name: "Generate updated last known good files" | |
| needs: [merge-artifacts] | |
| if: (success() || failure()) && (github.event_name == 'workflow_dispatch' && !inputs.use_lkg || github.event_name == 'schedule') | |
| strategy: | |
| matrix: | |
| kind: [tests, notebooks] | |
| include: | |
| - kind: tests | |
| output-name: lkg | |
| - kind: notebooks | |
| output-name: lkg-notebook | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v4 | |
| with: | |
| ref: ${{ env.ref }} | |
| - name: Setup Python | |
| uses: actions/setup-python@v5 | |
| - name: Download files | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: lkg-${{ matrix.kind }} | |
| path: requirements | |
| - name: "Generate last known good versions" | |
| run: python .github/workflows/generate_lkg.py requirements "lkg-${{ matrix.kind }}-(?P<os>[a-z]+)-(latest|[0-9.]+)-(?P<pyversion>[0-9.]+).txt" ${{ matrix.output-name }}.txt | |
| - name: "Upload last known good versions" | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ${{ matrix.output-name }} | |
| path: ${{ matrix.output-name }}.txt | |
| merge-lkg: | |
| name: "Merge last known good versions" | |
| needs: [generate-lkg] | |
| if: success() || failure() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: "Merge last known good versions" | |
| uses: actions/upload-artifact/merge@v4 | |
| with: | |
| # can't use just "lkg" for the name since that artifact already exists and merge won't overwrite it even when delete-merged is true | |
| name: lkg-files | |
| pattern: "lkg*" | |
| delete-merged: true | |
| build: | |
| name: Build package | |
| needs: [eval] | |
| if: ${{ needs.eval.outputs.testCode == 'True' }} | |
| uses: ./.github/workflows/publish-package.yml | |
| with: | |
| publish: false | |
| environment: test | |
| # don't have access to env context here for some reason | |
| ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} | |
| # can't use env context here so need to duplicate expression, but these are true boolean values so don't need extra string logic | |
| use_lkg: ${{ (github.event_name == 'workflow_dispatch' && inputs.use_lkg) || github.event_name == 'pull_request' }} | |
| docs: | |
| name: Build documentation | |
| needs: [eval] | |
| if: ${{ needs.eval.outputs.buildDocs == 'True' }} | |
| uses: ./.github/workflows/publish-documentation.yml | |
| with: | |
| publish: false | |
| environment: test | |
| # don't have access to env context here for some reason | |
| ref: ${{ github.event_name == 'workflow_dispatch' && inputs.ref || null }} | |
| # can't use env context here so need to duplicate expression, but these are true boolean values so don't need extra string logic | |
| use_lkg: ${{ (github.event_name == 'workflow_dispatch' && inputs.use_lkg) || github.event_name == 'pull_request' }} | |
| verify: | |
| name: Verify CI checks | |
| needs: [lint, notebooks, tests, build, docs] | |
| if: always() | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: At least one check failed or was cancelled | |
| run: exit 1 | |
| if: ${{ contains(needs.*.result, 'failure') || contains(needs.*.result, 'cancelled') }} | |
| - name: All checks passed | |
| run: exit 0 | |
| if: ${{ !(contains(needs.*.result, 'failure') || contains(needs.*.result, 'cancelled')) }} |